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PLM3_127_b2_sep16_scaffold_1986

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1986_1
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(730..1275)
DNA (546bp) protein (182aa)
YceI family protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C603_SPHTD
YceI like family
YceI like family {ECO:0000313|EMBL:ACM05873.1}; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
PLM3_127_b2_sep16_scaffold_1986_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1286..2380)
DNA (1095bp) protein (365aa)
Alcohol dehydrogenase class III bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alcohol dehydrogenase class III
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1986_3
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists


3281..3991
DNA (711bp) protein (237aa)
Methionyl-tRNA synthetase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8B7_SPHTD
methionyl-tRNA synthetase
Methionyl-tRNA synthetase {ECO:0000313|EMBL:ACZ40060.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3_127_b2_sep16_scaffold_1986_4
unknown

Not on your lists

comp(4022..4192)
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1986_5
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4290..5090)
DNA (801bp) protein (267aa)
Binding-protein-dependent transport system inner membrane component family protein 2 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HPB4_ACHXA
binding-protein-dependent transporter inner membrane component family protein 2
Tax=CG_Rhodocyc_01
PLM3_127_b2_sep16_scaffold_1986_6
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5087..5968)
DNA (882bp) protein (294aa)
Sugar ABC transporter permease Tax=Herbaspirillum sp. GW103 RepID=I3CX45_9BURK
Sugar ABC transporter permease {ECO:0000313|EMBL:EIJ48188.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
sugar ABC transporter permease
PLM3_127_b2_sep16_scaffold_1986_7
bacterium YEK0313, Bacteria

Not on your lists

comp(5978..7264)
DNA (1287bp) protein (429aa)
sn-glycerol-3-phosphate-binding periplasmic protein UgpB {ECO:0000313|EMBL:CEJ11971.1}; Flags: Precursor;; species="Bacteria.;" source="bacterium YEK0313.;"
extracellular solute-binding family protein; K05813 sn-glycerol 3-phosphate transport system substrate-binding protein bin=GWF1_Burkholderiales_GWF1_66_17 species=Thauera sp. 63 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Glycerol-3-phosphate ABC transporter,periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3
PLM3_127_b2_sep16_scaffold_1986_8
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7332..8423)
DNA (1092bp) protein (364aa)
ugpC1; sn-glycerol-3-phosphate import ATP-binding protein UgpC 1 (EC:3.6.3.20)
sn-glycerol-3-phosphate import ATP-binding protein UgpC 1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HPB7_ACHXA
Tax=CG_Rhodocyc_01
PLM3_127_b2_sep16_scaffold_1986_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8533..9618
DNA (1086bp) protein (362aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM64586.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
PLM3_127_b2_sep16_scaffold_1986_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9588..10352)
DNA (765bp) protein (255aa)
LysR family transcriptional regulator Tax=Oceanibaculum indicum P24 RepID=K2J224_9PROT
LysR family transcriptional regulator {ECO:0000313|EMBL:EKE68887.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
LysR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_1986_11
unknown

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10524..10733
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1986_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10739..14344
DNA (3606bp) protein (1202aa)
ABC transporter CydDC cysteine exporter family permease/ATP-binding protein CydC 1 Tax=Oceanibaculum indicum P24 RepID=K2JPZ1_9PROT
cydC1; ABC transporter CydDC cysteine exporter family permease/ATP-binding protein CydC 1
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_1986_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

14385..16016
DNA (1632bp) protein (544aa)
hypothetical protein bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_127_b2_sep16_scaffold_1986_14
unknown

Not on your lists

comp(15995..16096)
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1986_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(16093..17772)
DNA (1680bp) protein (560aa)
Drug resistance transporter, EmrB/QacA subfamily bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
EmrB/QacA subfamily drug resistance transporter
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_1986_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17738..18046)
DNA (309bp) protein (103aa)
id=4122810 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_1986_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18422..18781)
DNA (360bp) protein (120aa)
Short-chain dehydrogenase/reductase SDR Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SAV9_PELPB
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_1986_18
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18781..19044)
DNA (264bp) protein (88aa)
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI00026270D2
Uncharacterized protein {ECO:0000313|EMBL:ETX03688.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
short-chain dehydrogenase/reductase SDR
PLM3_127_b2_sep16_scaffold_1986_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19202..20281)
DNA (1080bp) protein (360aa)
Mandelate racemase/muconate lactonizing enzyme-like protein bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mandelate racemase / L-alanine-DL-glutamate epimerase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1986_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20474..20971
DNA (498bp) protein (166aa)
hypothetical protein SclubJA_18268 bin=GWA2_Methylomirabilis_73_35 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1986_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(21004..22068)
DNA (1065bp) protein (355aa)
Fis family transcriptional regulator bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
two component sigma54 specific Fis family transcriptional regulator
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1986_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22251..23366)
DNA (1116bp) protein (372aa)
Uncharacterized protein Tax=Bordetella bronchiseptica 253 RepID=K4QMG2_BORBO
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1986_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23486..23974
DNA (489bp) protein (163aa)
Competence/damage-inducible protein cinA bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
competence/damage-inducible protein cinA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1986_24
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24025..25425)
DNA (1401bp) protein (467aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
Periplasmic sensor signal transduction histidine kinase Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IDM7_ANADE
periplasmic sensor signal transduction histidine kinase
PLM3_127_b2_sep16_scaffold_1986_25
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25422..26135)
DNA (714bp) protein (238aa)
Two component transcriptional regulator, winged helix family Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IDM8_ANADE
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABC82684.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
PLM3_127_b2_sep16_scaffold_1986_26
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26178..26630)
DNA (453bp) protein (151aa)
Putative uncharacterized protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D041_MYXXD
Uncharacterized protein {ECO:0000313|EMBL:GAO01690.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1986_27
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

26768..27394
DNA (627bp) protein (209aa)
putative oxidoreductase bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
nitroreductase
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_1986_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

27420..28256
DNA (837bp) protein (279aa)
Phosphogluconate dehydrogenase, NAD-binding bin=GWC2_Methylomirabilis_70_16 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_1986_29
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28302..29093)
DNA (792bp) protein (264aa)
Putative hydrolase of the alpha/beta superfamily Tax=Herbaspirillum sp. CF444 RepID=J2UC97_9BURK
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM3_127_b2_sep16_scaffold_1986_30
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29225..29515)
DNA (291bp) protein (97aa)
Antibiotic biosynthesis monooxygenase Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9ARZ3_BURM1
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying items 1-30 of 41 in total

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