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PLM3_127_b2_sep16_scaffold_415

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_415_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1..1128
DNA (1128bp) protein (376aa)
Glycosyl transferase group 1 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_415_2
unknown

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1131..1448
DNA (318bp) protein (106aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_415_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

1445..2278
DNA (834bp) protein (278aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phenylacetate--CoA ligase (EC:6.2.1.30)
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_415_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

2248..2757
DNA (510bp) protein (170aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
paaK; phenylacetate--CoA ligase
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_415_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2920..3582)
DNA (663bp) protein (221aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3579..3998)
DNA (420bp) protein (140aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(4030..4350)
DNA (321bp) protein (107aa)
Dioxygenase, ferredoxin subunit bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dioxygenase, ferredoxin subunit
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_415_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4370..4747)
DNA (378bp) protein (126aa)
Putative response regulator (CheY-receiver and serine phosphatase domains) Tax=Azospirillum brasilense Sp245 RepID=G8AIE8_AZOBR
putative response regulator (CheY-receiver and serine phosphatase domains)
Putative response regulator (CheY-receiver and serine phosphatase domains) {ECO:0000313|EMBL:CCC99507.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM3_127_b2_sep16_scaffold_415_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4981..5961
DNA (981bp) protein (327aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fis family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_415_10
RLO_PLX_64_10, Bacteria

Not on your lists

comp(5994..6203)
DNA (210bp) protein (70aa)
Putative uncharacterized protein Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QEB4_DESAH
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_127_b2_sep16_scaffold_415_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6559..7770
DNA (1212bp) protein (404aa)
Arabinose efflux permease family protein bin=GWA2_Methylomirabilis_73_35 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MFS transporter permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_12
unknown

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comp(7881..7994)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_415_13

Not on your lists

8161..9348
DNA (1188bp) protein (396aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI000363B4E1
CoA-transferase family III {ECO:0000313|EMBL:AIA10953.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
formyl-CoA transferase
PLM3_127_b2_sep16_scaffold_415_14
unknown

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9416..9757
DNA (342bp) protein (114aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_415_15
unknown

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comp(9778..10482)
DNA (705bp) protein (235aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_415_trna_3
unknown

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comp(10931..11004)
DNA (74bp)
transferRNA Arg
PLM3_127_b2_sep16_scaffold_415_16
unknown

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11512..11667
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_415_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12164..13084)
DNA (921bp) protein (307aa)
RNA polymerase sigma factor bin=GWA2_Methylomirabilis_73_35 species=Selenomonas noxia genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RpoD subfamily RNA polymerase sigma-70 subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13077..13856)
DNA (780bp) protein (260aa)
NlpD; membrane protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidoglycan-binding peptidase M23B
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13904..14158)
DNA (255bp) protein (85aa)
Acylphosphatase bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acylphosphatase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_415_trna_2
unknown

Not on your lists

comp(14271..14344)
DNA (74bp)
transferRNA Pro
PLM3_127_b2_sep16_scaffold_415_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14369..15022)
DNA (654bp) protein (218aa)
Protein-L-isoaspartate O-methyltransferase 1 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein-L-isoaspartate O-methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15019..15789)
DNA (771bp) protein (257aa)
5'-nucleotidase SurE bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
surE; 5'(3')-nucleotidase/polyphosphatase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_415_trna_1
unknown

Not on your lists

comp(15849..15922)
DNA (74bp)
transferRNA Pro
PLM3_127_b2_sep16_scaffold_415_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15990..16346)
DNA (357bp) protein (119aa)
Regulatory protein MerR bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MerR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16356..16691)
DNA (336bp) protein (112aa)
Integration host factor, alpha subunit bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ihfA-1; integration host factor subunit alpha
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16729..17694)
DNA (966bp) protein (322aa)
Blr0521 protein bin=GWA2_Methylomirabilis_73_35 species=Tropheryma whipplei genus=Tropheryma taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17739..18608)
DNA (870bp) protein (290aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(18554..19903)
DNA (1350bp) protein (450aa)
GTPase Der bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
small GTP-binding protein domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19900..21222)
DNA (1323bp) protein (441aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron-sulfur cluster-binding oxidoreductase, cyano_FeS_chp family
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying items 1-30 of 89 in total

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