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PLM3_127_b2_sep16_scaffold_568

Search features with annotation key words

Displaying items 31-60 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_568_31
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(27290..27700)
DNA (411bp) protein (137aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative anti-sigma regulatory factor
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_32
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(27740..28900)
DNA (1161bp) protein (387aa)
Response regulator receiver modulated serine phosphatase bin=GWC2_Methylomirabilis_70_16 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator receiver modulated serine phosphatase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_568_33
RBG_16_Chloroflexi_58_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(28897..32076)
DNA (3180bp) protein (1060aa)
Multi-sensor signal transduction histidine kinase bin=GWA2_Methylomirabilis_73_35 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor signal transduction histidine kinase
Tax=RBG_16_Chloroflexi_58_14_curated
PLM3_127_b2_sep16_scaffold_568_34
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(32073..33248)
DNA (1176bp) protein (392aa)
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_568_35
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(33286..33945)
DNA (660bp) protein (220aa)
Hypothetical conserved protein bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_36
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

34033..34725
DNA (693bp) protein (231aa)
7-cyano-7-deazaguanine synthase Tax=Thiorhodovibrio sp. 970 RepID=H8Z4H2_9GAMM
exsB protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM3_127_b2_sep16_scaffold_568_37
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(34824..36245)
DNA (1422bp) protein (474aa)
hypothetical protein bin=bin7_NC10_sister species=Smithella sp. ME-1 genus=Smithella taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_38
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(36263..37279)
DNA (1017bp) protein (339aa)
PDZ/DHR/GLGF domain protein bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PDZ/DHR/GLGF
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_568_39
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(37286..37879)
DNA (594bp) protein (198aa)
Putative dTDP-4-dehydrorhamnose 3,5-epimerase bin=GWA2_Methylomirabilis_73_35 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative dTDP-4-dehydrorhamnose 3,5-epimerase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_568_40
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

37969..38889
DNA (921bp) protein (307aa)
Molybdopterin biosynthesis protein MoeB bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moeB1; molybdopterin biosynthesis protein MoeB
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_41
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

38911..39195
DNA (285bp) protein (95aa)
Rhodanese/MoeB/ThiF domain protein bin=GWC2_Methylomirabilis_70_16 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
UBA/THIF-type NAD/FAD binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_42
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

39317..39817
DNA (501bp) protein (167aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_ANIW141A21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_43
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(39821..40900)
DNA (1080bp) protein (360aa)
Periplasmic trypsin-like serine protease DegP bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
degP; serine protease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_44
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(40948..41475)
DNA (528bp) protein (176aa)
Molybdenum cofactor biosynthesis protein B bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
moaB; molybdenum cofactor biosynthesis protein B
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_45
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(41472..42767)
DNA (1296bp) protein (432aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_46
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(42802..44115)
DNA (1314bp) protein (438aa)
FAD linked oxidase-like protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FAD linked oxidase-like protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_47
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(44135..45610)
DNA (1476bp) protein (492aa)
Glycolate oxidase, subunit GlcD bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FAD linked oxidase domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_48
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

45702..46988
DNA (1287bp) protein (429aa)
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21); (Thermus ruber).;"
hypothetical protein Tax=Afipia birgiae RepID=UPI0002DD9F7C
PLM3_127_b2_sep16_scaffold_568_49
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(47145..47717)
DNA (573bp) protein (191aa)
Ribosomal protein L11 methylase {ECO:0000313|EMBL:CDM65346.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ribosomal protein L11 methylase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
RNA methylase family protein
PLM3_127_b2_sep16_scaffold_568_50
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47982..49076)
DNA (1095bp) protein (365aa)
Uncharacterized protein Tax=Halogranum salarium B-1 RepID=J2ZKH4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ETX04393.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
HTR-like protein
PLM3_127_b2_sep16_scaffold_568_51
unknown

Not on your lists

49253..49546
DNA (294bp) protein (98aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_568_52
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

49592..50200
DNA (609bp) protein (203aa)
Binding-protein-dependent transport system inner membrane component bin=GWF2_Methylomirabilis_70_14 species=Micromonospora sp. ATCC 39149 genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter permease
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_568_53
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

50478..50759
DNA (282bp) protein (94aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_568_54
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50756..51157
DNA (402bp) protein (134aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG87_9BACT
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3_127_b2_sep16_scaffold_568_55
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51380..52342
DNA (963bp) protein (321aa)
Alpha/beta hydrolase fold-3 domain protein Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YWU6_DESAF
alpha/beta hydrolase
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:EGJ51670.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
PLM3_127_b2_sep16_scaffold_568_56
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

52444..53229
DNA (786bp) protein (262aa)
glucose 1-dehydrogenase (EC:1.1.1.47)
Short-chain dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM3_127_b2_sep16_scaffold_568_57
unknown

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53229..53366
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_568_58
unknown

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53374..53628
DNA (255bp) protein (85aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_568_59
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

53630..54058
DNA (429bp) protein (143aa)
Putative uncharacterized protein bin=GWC2_Nitrospirae_57_13 species=Cyanothece sp. CCY0110 genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
PilT-like protein
Tax=RBG_16_Archaea_50_20_curated
PLM3_127_b2_sep16_scaffold_568_60
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

54078..56408
DNA (2331bp) protein (777aa)
carbon-monoxide dehydrogenase (EC:1.2.99.2)
Carbon-monoxide dehydrogenase (Acceptor) {ECO:0000313|EMBL:AEA27194.1}; EC=1.2.99.2 {ECO:0000313|EMBL:AEA27194.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Carbon-monoxide dehydrogenase (Acceptor) Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPZ8_PSEUX
Displaying items 31-60 of 64 in total

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