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PLM3_127_b2_sep16_scaffold_568

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Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_568_1
Gammaproteobacteria bacterium MFB021, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..690
DNA (690bp) protein (230aa)
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MMF5_PSEPS
Uncharacterized protein {ECO:0000313|EMBL:KFF50086.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MFB021.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_568_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

695..1462
DNA (768bp) protein (256aa)
Methyltransferase type 11 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VKC4_9CYAN
Methyltransferase type 11
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_127_b2_sep16_scaffold_568_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

1459..2127
DNA (669bp) protein (223aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00037CD4AA
cyclase family protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_568_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2213..3148
DNA (936bp) protein (312aa)
tRNA-dihydrouridine synthase bin=GWF2_Methylomirabilis_70_14 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nifR3; TIM barrel oxidoreductase NifR3
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_568_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3145..3588
DNA (444bp) protein (148aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
monoamine oxidase regulatory protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_568_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3665..4765)
DNA (1101bp) protein (367aa)
Low-specificity threonine aldolase bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium FLS18 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alanine racemase domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4824..5990
DNA (1167bp) protein (389aa)
Serine-glyoxylate aminotransferase; Alanine-glyoxylate aminotransferase; Serine-pyruvate aminotransferase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aminotransferase class-V family protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(5974..6447)
DNA (474bp) protein (158aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Robiginitalea biformata genus=Robiginitalea taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6448..7143)
DNA (696bp) protein (232aa)
Beta-propeller domain-containing protein, methanol dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=Microvirga sp. WSM3557 genus=Microvirga taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7190..7774)
DNA (585bp) protein (195aa)
LemA family protein bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7839..8690
DNA (852bp) protein (284aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8687..9823
DNA (1137bp) protein (379aa)
Glucose dehydrogenase (GDH) bin=GWA2_Methylomirabilis_73_35 species=Thermoproteus uzoniensis genus=Thermoproteus taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_568_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9827..10618
DNA (792bp) protein (264aa)
crt; 3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
Enoyl-CoA hydratase/carnithine racemase bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_568_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10626..11162
DNA (537bp) protein (179aa)
hypothetical protein bin=bin7_NC10_sister species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11149..11418)
DNA (270bp) protein (90aa)
id=4527564 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11461..12204)
DNA (744bp) protein (248aa)
Peptidase family C39 bin=GWA2_Elusimicrobia_69_24 species=Deinococcus geothermalis genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12810..13814)
DNA (1005bp) protein (335aa)
alcohol dehydrogenase; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] bin=bin5_DeltaP species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
zinc-binding alcohol dehydrogenase (EC:1.1.1.1)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_568_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13831..14718)
DNA (888bp) protein (296aa)
Citryl-CoA lyase bin=GWC2_Methylomirabilis_70_24 species=Mesorhizobium opportunistum genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
citrate lyase beta subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14715..15167)
DNA (453bp) protein (151aa)
Acyl dehydratase bin=GWA2_Methylomirabilis_73_35 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
monoamine oxidase MaoC
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_568_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15346..16557
DNA (1212bp) protein (404aa)
2-hydroxyglutarate dehydrogenase (EC:1.1.99.2)
Putative oxidoreductase bin=GWC2_Methylomirabilis_70_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_21
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16699..17526
DNA (828bp) protein (276aa)
rRNA methyltransferase Tax=Amycolatopsis nigrescens RepID=UPI000372B154
rRNA methylase {ECO:0000313|EMBL:EHR52916.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
putative RNA methyltransferase
PLM3_127_b2_sep16_scaffold_568_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(17646..19085)
DNA (1440bp) protein (480aa)
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter periplasmic oligopeptide-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_568_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19421..20395)
DNA (975bp) protein (325aa)
Binding-protein-dependent transport systems inner membrane component bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_568_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(20364..21290)
DNA (927bp) protein (309aa)
Binding-protein-dependent transport systems inner membrane component bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
binding-protein-dependent transport system inner membrane protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_568_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21420..22100)
DNA (681bp) protein (227aa)
DMT family permease bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
DMT family permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

22376..23509
DNA (1134bp) protein (378aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_568_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23506..23988)
DNA (483bp) protein (161aa)
transcription elongation factor GreA; K03624 transcription elongation factor GreA bin=bin7_NC10_sister species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
greA; transcription elongation factor GreA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24103..25998)
DNA (1896bp) protein (632aa)
Peptidylprolyl cis-trans isomerase, putative bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_568_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(26033..26854)
DNA (822bp) protein (274aa)
tRNA (Adenine-N(1)-)-methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (adenine-N(1)-)-methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_568_30
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(26908..27249)
DNA (342bp) protein (114aa)
Stage II sporulation protein bin=GWC2_Methylomirabilis_70_16 species=Xylanimonas cellulosilytica genus=Xylanimonas taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
Tax=GWC2_Rokubacteria_70_16_curated
Displaying items 1-30 of 64 in total

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