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PLM3_127_b2_sep16_scaffold_807

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_807_1
unknown

Not on your lists

comp(1..63)
DNA (63bp) protein (21aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_807_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(119..445)
DNA (327bp) protein (109aa)
Arsenical resistance operon repressor Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEK8_9BACT
arsR; Arsenical resistance operon repressor
Arsenical resistance operon repressor {ECO:0000313|EMBL:CBE68185.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3_127_b2_sep16_scaffold_807_3
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(490..1680)
DNA (1191bp) protein (397aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003656D0F
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM3_127_b2_sep16_scaffold_807_4
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(1727..2923)
DNA (1197bp) protein (399aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003656D0F
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM3_127_b2_sep16_scaffold_807_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2927..3391)
DNA (465bp) protein (155aa)
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 1 Tax=Cupriavidus basilensis OR16 RepID=H1SG42_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ETX00889.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 1
PLM3_127_b2_sep16_scaffold_807_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3598..4728
DNA (1131bp) protein (377aa)
Beta-lactamase Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A5Y6_9PROT
penicillin-binding protein, beta-lactamase class C
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_127_b2_sep16_scaffold_807_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4792..5517
DNA (726bp) protein (242aa)
NAD-dependent epimerase/dehydratase bin=GWA2_Methylomirabilis_73_35 species=Burkholderia graminis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NAD-dependent epimerase/dehydratase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_807_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5663..7060
DNA (1398bp) protein (466aa)
Beta-lactamase domain protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BYI4_NITHN
beta-lactamase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_807_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7261..8049
DNA (789bp) protein (263aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.-)
Oxidoreductase family protein bin=GWA2_Methylomirabilis_73_35 species=endosymbiont of Riftia pachyptila genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_807_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(8187..8777)
DNA (591bp) protein (197aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_807_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(8749..9000)
DNA (252bp) protein (84aa)
id=3784790 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_807_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9043..9687
DNA (645bp) protein (215aa)
MutT/nudix family protein bin=GWA2_Methylomirabilis_73_35 species=Frankia alni genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MutT/nudix family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_807_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9812..10606
DNA (795bp) protein (265aa)
Short-chain alcohol dehydrogenase bin=GWF2_Methylomirabilis_70_14 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_807_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10805..11410
DNA (606bp) protein (202aa)
Redoxin domain protein bin=GWF2_Methylomirabilis_70_14 species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
redoxin domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_807_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

11442..12209
DNA (768bp) protein (256aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_807_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12335..13327
DNA (993bp) protein (331aa)
Short-chain dehydrogenase/reductase SDR bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
short-chain dehydrogenase/reductase SDR
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_807_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13404..13883
DNA (480bp) protein (160aa)
Protein tyrosine phosphatase bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
low molecular weight protein-tyrosine-phosphatase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_807_18
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13948..14148)
DNA (201bp) protein (67aa)
Putative ATP-binding component of a transport system Tax=Ahrensia sp. R2A130 RepID=E0MM50_9RHOB
Putative ATP-binding component of a transport system {ECO:0000313|EMBL:EFL89834.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
ABC transporter related
PLM3_127_b2_sep16_scaffold_807_19
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14118..15470)
DNA (1353bp) protein (451aa)
Oligopeptide ABC transporter, ATP-binding components Tax=Azospirillum brasilense Sp245 RepID=G8AIM6_AZOBR
Microcin ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGM34615.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
oligopeptide ABC transporter, ATP-binding components
PLM3_127_b2_sep16_scaffold_807_20
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15467..16486)
DNA (1020bp) protein (340aa)
Oligopeptide ABC transporter, permease component Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8D1_AZOL4
ABC transporter permease {ECO:0000313|EMBL:KJB93907.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ABC transporter permease
PLM3_127_b2_sep16_scaffold_807_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16483..17595)
DNA (1113bp) protein (371aa)
Oligopeptide ABC transporter permease Tax=Oceanibaculum indicum P24 RepID=K2JS77_9PROT
Oligopeptide ABC transporter permease {ECO:0000313|EMBL:EKE78323.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
microcin ABC transporter permease
PLM3_127_b2_sep16_scaffold_807_22
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17595..19427)
DNA (1833bp) protein (611aa)
Oligopeptide ABC transporter, periplasmic component Tax=Oceanibaculum indicum P24 RepID=K2JUV4_9PROT
Oligopeptide ABC transporter, periplasmic component {ECO:0000313|EMBL:EKE78322.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
oligopeptide ABC transporter, periplasmic component
PLM3_127_b2_sep16_scaffold_807_23
unknown

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comp(19418..19630)
DNA (213bp) protein (71aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_807_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19647..21077
DNA (1431bp) protein (477aa)
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase bin=GWF2_Methylomirabilis_70_14 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_807_25
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

21379..21684
DNA (306bp) protein (102aa)
RNP-1 like RNA-binding protein bin=GWC2_Methylomirabilis_70_24 species=Acanthamoeba castellanii genus=Acanthamoeba taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RNP-1 like RNA-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_807_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21653..21916
DNA (264bp) protein (88aa)
30S ribosomal protein S21 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S21
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_807_27
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

21924..22913
DNA (990bp) protein (330aa)
putative metal-dependent hydrolase (EC:4.1.1.45)
2-amino-3-carboxymuconate 6-semialdehyde decarboxylase Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJY1_9BACT
2-amino-3-carboxymuconate 6-semialdehyde decarboxylase {ECO:0000313|EMBL:ABV27271.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum.;"
PLM3_127_b2_sep16_scaffold_807_28
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

23635..25287
DNA (1653bp) protein (551aa)
Probable acetolactate synthase large subunit bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_807_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25284..26165
DNA (882bp) protein (294aa)
Immunogenic protein Tax=Bradyrhizobium sp. S23321 RepID=I0GDT6_9BRAD
immunogenic protein precursor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_807_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26213..27205
DNA (993bp) protein (331aa)
Aldo/keto reductase bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aldo/keto reductase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying items 1-30 of 42 in total

View Taxonomy