ggKbase home page

PLM3_127_b2_sep16_scaffold_826

Search features with annotation key words

Displaying items 31-60 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_826_31
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(33824..34696)
DNA (873bp) protein (291aa)
tpl protein bin=bin7_NC10_sister species=Shuttleworthia satelles genus=Shuttleworthia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_826_32
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(34712..35605)
DNA (894bp) protein (298aa)
DNA polymerase III, delta prime subunit bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
holB; DNA polymerase III subunit delta'
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_826_33
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(35595..36206)
DNA (612bp) protein (204aa)
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_826_34
unknown

Not on your lists

36405..36638
DNA (234bp) protein (78aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_826_35
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(36543..37754)
DNA (1212bp) protein (404aa)
histone deacetylase/AcuC/AphA family protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
histone deacetylase/AcuC/AphA family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_826_36
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(37751..38257)
DNA (507bp) protein (169aa)
moaC; molybdenum cofactor biosynthesis protein C; K03637 molybdenum cofactor biosynthesis protein C bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
moaC1; molybdenum cofactor biosynthesis protein C
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_826_37
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(38280..38507)
DNA (228bp) protein (76aa)
hypothetical protein bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_826_38
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(38694..39827)
DNA (1134bp) protein (378aa)
putative ABC transporter ATP-binding protein; K02017 molybdate transport system ATP-binding protein [EC:3.6.3.29] bin=bin7_NC10_sister species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
putative ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_826_39
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39880..40545)
DNA (666bp) protein (222aa)
Molybdate ABC transporter, inner membrane subunit Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NH81_DESAR
molybdate ABC transporter permease
Molybdate ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEB08923.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
PLM3_127_b2_sep16_scaffold_826_40
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

40802..41305
DNA (504bp) protein (168aa)
Molybdenum-pterin-binding protein, conjectural Tax=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) RepID=Q8ZYE6_PYRAE
molybdenum-pterin-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_826_41
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(41261..41656)
DNA (396bp) protein (132aa)
Regulatory protein, lysr family, putative Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TEN3_HELMI
LysR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_826_42
Paenibacillus sabinae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

41833..42318
DNA (486bp) protein (162aa)
Hypothetical membrane protein Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MXQ4_ANATU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHV98897.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sabinae T27.;"
PLM3_127_b2_sep16_scaffold_826_43
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(42438..43565)
DNA (1128bp) protein (376aa)
Tungsten transporter ATP binding protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Tungsten transporter ATP binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_826_44
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(43562..44263)
DNA (702bp) protein (234aa)
ABC-type tungstate transport permease protein bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tungstate ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_826_45
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(44267..45106)
DNA (840bp) protein (280aa)
ABC-type tungstate transport system permease component-like protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type tungstate transport system permease component-like protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_826_46
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

45215..46078
DNA (864bp) protein (288aa)
Putative FAD binding domain in molybdopterin dehydrogenase Tax=uncultured marine microorganism HF4000_008B14 RepID=B3T109_9ZZZZ
h16_A3369; molybdopterin dehydrogenase
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3_127_b2_sep16_scaffold_826_47

Not on your lists

46098..46583
DNA (486bp) protein (162aa)
Xanthine dehydrogenase family protein, small subunit Tax=uncultured bacterium RepID=K2AUU5_9BACT
Marine sediment metagenome DNA, contig: S01H4_S12614 {ECO:0000313|EMBL:GAG96785.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
carbon monoxide dehydrogenase small chain
PLM3_127_b2_sep16_scaffold_826_48
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

46586..48952
DNA (2367bp) protein (789aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_826_49
Spiribacter salinus, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48986..49405
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Spiribacter salinus M19-40 RepID=R4VDF2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGM40346.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Spiribacter.;" source="Spiribacter salinus M19-40.;"
PLM3_127_b2_sep16_scaffold_826_50
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(49462..50985)
DNA (1524bp) protein (508aa)
5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase Tax=Burkholderia gladioli (strain BSR3) RepID=F2LA40_BURGS
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_127_b2_sep16_scaffold_826_51
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(50996..51358)
DNA (363bp) protein (121aa)
hypothetical protein bin=bin3_NC10 species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_127_b2_sep16_scaffold_826_52
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(51361..51585)
DNA (225bp) protein (75aa)
SirA domain-containing protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] bin=bin3_NC10 species=Yaniella halotolerans genus=Yaniella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
Sulfurtransferase tusA (EC:2.8.1.-)
Tax=CSP1_5_NC10
PLM3_127_b2_sep16_scaffold_826_53
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51830..52351
DNA (522bp) protein (174aa)
Probable thiol peroxidase {ECO:0000256|HAMAP-Rule:MF_00269}; EC=1.11.1.- {ECO:0000256|HAMAP-Rule:MF_00269};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
Probable thiol peroxidase Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LRN8_DESBD
redoxin domain-containing protein
PLM3_127_b2_sep16_scaffold_826_54
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52529..53074
DNA (546bp) protein (182aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XYY8_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP37135.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM3_127_b2_sep16_scaffold_826_55
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

53094..54356
DNA (1263bp) protein (421aa)
Diaminopimelate decarboxylase bin=GWC2_Methylomirabilis_70_24 species=Coraliomargarita akajimensis genus=Coraliomargarita taxon_order=Puniceicoccales taxon_class=Opitutae phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
diaminopimelate decarboxylase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_826_56
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54358..55143)
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UG96_ADVKW
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_826_57
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(55374..55607)
DNA (234bp) protein (78aa)
Toxin-antitoxin system, antitoxin component, HicB family bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_127_b2_sep16_scaffold_826_58
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(55662..57758)
DNA (2097bp) protein (699aa)
aor6; tungsten-containing aldehyde ferredoxin oxidoreductase Aor (EC:1.2.7.5)
Tungsten-containing aldehyde ferredoxin oxidoreductase Aor bin=GWF2_Methylomirabilis_70_14 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_826_59
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

57842..58423
DNA (582bp) protein (194aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_826_60
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58445..58798
DNA (354bp) protein (118aa)
Adenylate/guanylate cyclase bin=GWC2_Methylomirabilis_70_16 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
adenylate/guanylate cyclase
Tax=RBG_16_Betaproteobacteria_66_20_curated
Displaying items 31-60 of 68 in total

View Taxonomy