ggKbase home page

PLM3_127_b2_sep16_scaffold_12625

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_12625_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3..131
DNA (129bp) protein (43aa)
pstB; high-affinity phosphate transport protein (ABC superfamily, atp_bind) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Phosphate transport ATP-binding protein PstB
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_12625_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

146..874
DNA (729bp) protein (243aa)
Phosphate transport system protein PhoU bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phoU; phosphate transport system protein PhoU
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_12625_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

936..1811
DNA (876bp) protein (292aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_12625_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1946..2983
DNA (1038bp) protein (346aa)
Possible lysine decarboxylase family bin=GWF2_Methylomirabilis_70_14 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_12625_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3034..3222)
DNA (189bp) protein (63aa)
id=4476363 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_12625_6
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3554..4321
DNA (768bp) protein (256aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
histidine kinase Tax=Amycolatopsis methanolica RepID=UPI00036D6EE4
kdpD; sensor histidine kinase
PLM3_127_b2_sep16_scaffold_12625_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4418..6187)
DNA (1770bp) protein (590aa)
Lipid A export ATP-binding/permease protein MsbA bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phospholipid-lipopolysaccharide ABC transporter
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_12625_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6184..6771)
DNA (588bp) protein (196aa)
DegT/DnrJ/EryC1/StrS aminotransferase bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_12625_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6711..7214)
DNA (504bp) protein (168aa)
DegT/DnrJ/EryC1/StrS aminotransferase bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamine--scyllo-inositol transaminase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_12625_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7211..7636)
DNA (426bp) protein (142aa)
flavin reductase domain-containing protein bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
putative oxidoreductase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_12625_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7760..8866
DNA (1107bp) protein (369aa)
Mrp bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_12625_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8899..9507
DNA (609bp) protein (203aa)
lon3; ATP-dependent protease La; K07157 bin=bin7_NC10_sister species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ATP-dependent protease La
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_12625_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9500..10252
DNA (753bp) protein (251aa)
serine protease (EC:3.4.21.-)
Protease Do bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_12625_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10285..10536
DNA (252bp) protein (84aa)
Carbamoyl transferase bin=GWF2_Methylomirabilis_70_14 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbamoyl transferase, NodU family
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_12625_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10573..12033
DNA (1461bp) protein (487aa)
Carbamoyl transferase bin=GWF2_Methylomirabilis_70_14 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbamoyl transferase, NodU family
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 15 items

View Taxonomy