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PLM3_127_b2_sep16_scaffold_213

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_213_1
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..384)
-----------------
DNA (384bp)
protein (128aa)
Uncharacterized protein Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EQV7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV07174.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
glyoxalase/bleomycin resistance protein/dioxygenase
PLM3_127_b2_sep16_scaffold_213_2
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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463..1074
-----------------
DNA (612bp)
protein (204aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U2F4_9CHLR
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EFH82822.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
ECF family RNA polymerase sigma factor
PLM3_127_b2_sep16_scaffold_213_3
Streptomyces auratus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1091..1339
-----------------
DNA (249bp)
protein (83aa)
RNA polymerase sigma factor Tax=Streptomyces auratus AGR0001 RepID=J2A2M3_9ACTO
RNA polymerase sigma factor {ECO:0000313|EMBL:EJJ08436.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces auratus AGR0001.;"
ECF subfamily RNA polymerase sigma-24 subunit
PLM3_127_b2_sep16_scaffold_213_4
unknown

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comp(1498..1953)
-----------------
DNA (456bp)
protein (152aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_213_5
unknown

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2046..2276
-----------------
DNA (231bp)
protein (77aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_213_6
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2646..3044)
-----------------
DNA (399bp)
protein (133aa)
amidohydrolase Tax=Streptomyces sp. R1-NS-10 RepID=UPI0003629252
Uncharacterized protein {ECO:0000313|EMBL:ETW97604.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
amidohydrolase 2
PLM3_127_b2_sep16_scaffold_213_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3068..3679)
-----------------
DNA (612bp)
protein (204aa)
amidohydrolase Tax=Sphingomonas sp. KC8 RepID=UPI000248A3AA
Uncharacterized protein {ECO:0000313|EMBL:ETW97604.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hydrolase
PLM3_127_b2_sep16_scaffold_213_8
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3802..4212)
-----------------
DNA (411bp)
protein (137aa)
ABC transporter Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002626D07
uvrA; excinuclease subunit A
Excinuclease subunit A {ECO:0000313|EMBL:AIJ23577.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM3_127_b2_sep16_scaffold_213_9
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(4331..4765)
-----------------
DNA (435bp)
protein (145aa)
Conserved uncharacterized protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09DV1_STIAD
hypothetical protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3_127_b2_sep16_scaffold_213_10
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4762..5073)
-----------------
DNA (312bp)
protein (104aa)
Regulatory protein ArsR Tax=Anaeromyxobacter sp. (strain K) RepID=B4UEW3_ANASK
Transcriptional repressor SdpR {ECO:0000313|EMBL:GAO03115.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
regulatory protein ArsR
PLM3_127_b2_sep16_scaffold_213_11
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5104..5208
-----------------
DNA (105bp)
protein (35aa)
Aldo/keto reductase Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SRW4_PLAL2
aldo/keto reductase
Aldo-keto reductase {ECO:0000313|EMBL:CCH80456.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
PLM3_127_b2_sep16_scaffold_213_12
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(5276..5725)
-----------------
DNA (450bp)
protein (150aa)
AraC family transcriptional regulator Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI00035D5544
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EWC64577.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
AraC family transcriptional regulator
PLM3_127_b2_sep16_scaffold_213_13
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5994..6698
-----------------
DNA (705bp)
protein (235aa)
Transposase Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UBZ8_CELFN
Transposase {ECO:0000313|EMBL:EYR64531.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
transposase
PLM3_127_b2_sep16_scaffold_213_14

Not on your lists

comp(6524..6904)
-----------------
DNA (381bp)
protein (127aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL22090.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_127_b2_sep16_scaffold_213_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7405..8010)
-----------------
DNA (606bp)
protein (202aa)
padC2; 3,4-dihydroxyphthalate decarboxylase (EC:4.1.1.69)
Class II aldolase/adducin family protein Tax=Microbacterium laevaniformans OR221 RepID=H8E5I6_9MICO
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_127_b2_sep16_scaffold_213_16
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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8089..10002
-----------------
DNA (1914bp)
protein (638aa)
Aldehyde ferredoxin oxidoreductase bin=GWC2_Methylomirabilis_70_16 species=Archaeoglobus sulfaticallidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Aldehyde:ferredoxin oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_127_b2_sep16_scaffold_213_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10130..10930
-----------------
DNA (801bp)
protein (267aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein bin=GWC2_Methylomirabilis_70_16 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
4fe-4S ferredoxin iron-sulfur binding domain protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_213_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11299..12474
-----------------
DNA (1176bp)
protein (392aa)
Glycosyl transferase group 1 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_213_19
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(12457..13566)
-----------------
DNA (1110bp)
protein (370aa)
Glycosyl transferase, group 1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AY69_RUBXD
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABG03659.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_127_b2_sep16_scaffold_213_20
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(13644..13997)
-----------------
DNA (354bp)
protein (118aa)
Anti-sigma factor antagonist Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASP0_RUBXD
anti-sigma-factor antagonist
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_127_b2_sep16_scaffold_213_21
Leptospira licerasiae, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(13994..15304)
-----------------
DNA (1311bp)
protein (437aa)
Glycosyl hydrolase, family 57 Tax=Leptospira licerasiae RepID=I0XNC5_9LEPT
Glycosyl hydrolase, family 57 {ECO:0000313|EMBL:EIE00383.1}; species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira licerasiae serovar Varillal str. VAR 010.;"
PLM3_127_b2_sep16_scaffold_213_22
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(15330..16508)
-----------------
DNA (1179bp)
protein (393aa)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:MF_00246}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
Galactokinase Tax=Oscillochloris trichoides DG-6 RepID=E1IGW5_9CHLR
galK; galactokinase
PLM3_127_b2_sep16_scaffold_213_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

16652..17380
-----------------
DNA (729bp)
protein (243aa)
Adenylate cyclase protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SPR5_9DELT
FHA domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_127_b2_sep16_scaffold_213_24
Desulfosporosinus meridiei, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17528..18625
-----------------
DNA (1098bp)
protein (366aa)
peptidoglycan hydrolase Tax=Saccharopolyspora spinosa RepID=UPI000237B716
glycosyl hydrolase
Putative glycosyl hydrolase {ECO:0000313|EMBL:AFQ42944.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB; 13706 / S10).;"
PLM3_127_b2_sep16_scaffold_213_25
Methanofollis liminatans, Methanofollis, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

18676..19617
-----------------
DNA (942bp)
protein (314aa)
NAD-dependent epimerase/dehydratase Tax=Methanofollis liminatans DSM 4140 RepID=J1L2D7_9EURY
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EJG06820.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanofollis.;" source="Methanofollis liminatans DSM 4140.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_213_26
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

19631..21178
-----------------
DNA (1548bp)
protein (516aa)
FHA domain containing protein Tax=Treponema saccharophilum DSM 2985 RepID=H7EJW5_9SPIO
FHA domain-containing protein
Tax=RBG_16_Chloroflexi_54_18_curated
PLM3_127_b2_sep16_scaffold_213_27
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21182..24412
-----------------
DNA (3231bp)
protein (1077aa)
Glycosyl transferase and polysaccharide deacetylase fusion protein Tax=Bacillus cereus Rock3-44 RepID=C2W6E3_BACCE
Glycosyl transferase and polysaccharide deacetylase fusion protein {ECO:0000313|EMBL:EEL51272.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus Rock3-44.;"
cytosolic protein
PLM3_127_b2_sep16_scaffold_213_28
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

24431..25417
-----------------
DNA (987bp)
protein (329aa)
TPR repeat-containing protein Tax=Anabaena sp. 90 RepID=K7WL27_9NOST
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:KIY15144.1}; species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_213_29
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(26076..27323)
-----------------
DNA (1248bp)
protein (416aa)
GAF sensor-containing protein serine phosphatase bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
GAF sensor-containing protein serine phosphatase
Tax=RBG_16_Chloroflexi_52_11_curated
PLM3_127_b2_sep16_scaffold_213_30
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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27434..27778
-----------------
DNA (345bp)
protein (115aa)
Anti-sigma factor antagonist Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G423_CHLAD
anti-sigma-factor antagonist
Tax=CG_Syntroph_02
Displaying items 1-30 of 53 in total

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