ggKbase home page

PLM3_127_b2_sep16_scaffold_5564

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_5564_1
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

3..536
DNA (534bp) protein (178aa)
toxin Fic Tax=Hippea alviniae RepID=UPI0003B4E3B1
fic
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3_127_b2_sep16_scaffold_5564_2
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(703..3984)
DNA (3282bp) protein (1094aa)
Peptidase s41 Tax=Melioribacter roseus (strain P3M) RepID=I6ZXD5_MELRP
Peptidase s41 {ECO:0000313|EMBL:AFN73723.1}; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
peptidase s41
PLM3_127_b2_sep16_scaffold_5564_3
Pseudanabaena sp. PCC 7367, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(4116..4688)
DNA (573bp) protein (191aa)
Methyltransferase type 11 Tax=Pseudanabaena sp. PCC 7367 RepID=K9SL73_9CYAN
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:AFY70973.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena sp. PCC 7367.;"
PLM3_127_b2_sep16_scaffold_5564_4
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(4757..5641)
DNA (885bp) protein (295aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4DBE3_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_5564_5
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

comp(5683..6114)
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z2U3_AZOL4
hypothetical protein
Tax=RBG_16_Zixibacteria_50_21_curated
PLM3_127_b2_sep16_scaffold_5564_6
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(6276..6704)
DNA (429bp) protein (143aa)
Peptide chain release factor bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
class I peptide chain release factor
Tax=RBG_16_Chloroflexi_57_11_curated
PLM3_127_b2_sep16_scaffold_5564_7
bacterium UASB270, Bacteria

Not on your lists

comp(6782..7396)
DNA (615bp) protein (205aa)
Putative LysE/RhtB family amino acid efflux pump Tax=Oscillatoria sp. PCC 6506 RepID=D8FWI1_9CYAN
Putative LysE/RhtB family amino acid efflux pump {ECO:0000313|EMBL:GAK57826.1}; species="Bacteria.;" source="bacterium UASB270.;"
threonine efflux protein
PLM3_127_b2_sep16_scaffold_5564_8
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(7749..9998)
DNA (2250bp) protein (750aa)
ATP-dependent Clp protease ATP-binding subunit ClpA Tax=Leptospira sp. B5-022 RepID=M6DCM7_9LEPT
clpA; ATP-dependent protease ClpP
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_5564_9
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(9998..10336)
DNA (339bp) protein (113aa)
ATP-dependent Clp protease adaptor protein ClpS Tax=Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 RepID=V6HXI2_9LEPT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_5564_10
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(10374..11573)
DNA (1200bp) protein (400aa)
PF04339 family protein Tax=Leptospira noguchii str. 2007001578 RepID=M6I977_9LEPT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_5564_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

11774..12025
DNA (252bp) protein (84aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM3_127_b2_sep16_scaffold_5564_12
unknown

Not on your lists

12072..12206
DNA (135bp) protein (45aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5564_13
CG_CPR05_02, CG_CPR05, Bacteria

Not on your lists

12272..13078
DNA (807bp) protein (269aa)
seg 35..49 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Tax=CG_CPR05_02
PLM3_127_b2_sep16_scaffold_5564_14
BJP_IG2158_OD1_28_51, Parcubacteria, Bacteria

Not on your lists

13097..13492
DNA (396bp) protein (132aa)
Transposase Tax=Chamaesiphon minutus PCC 6605 RepID=K9UAJ2_9CHRO
transposase
Tax=BJP_IG2158_OD1_28_51
PLM3_127_b2_sep16_scaffold_5564_15
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(13476..14405)
DNA (930bp) protein (310aa)
luciferase-like protein bin=bin1_lowGC species=Halopiger xanaduensis genus=Halopiger taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
luciferase-like protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_5564_16
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

14805..15494
DNA (690bp) protein (230aa)
peptidyl-prolyl cis-trans isomerase A bin=bin1_lowGC species=Pseudomonas denitrificans genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
peptidyl-prolyl cis-trans isomerase A
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_5564_17
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(16541..17455)
DNA (915bp) protein (305aa)
tonb family protein; K03832 periplasmic protein TonB bin=bin1_lowGC species=Hippea alviniae genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
TonB family protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_5564_18
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(17579..18346)
DNA (768bp) protein (256aa)
surE; 5'/3'-nucleotidase SurE (EC:3.1.3.5 3.1.3.6); K03787 5'-nucleotidase [EC:3.1.3.5] bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
surE; stationary phase survival protein SurE (EC:3.1.3.5)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_5564_trna_1
unknown

Not on your lists

comp(18781..18854)
DNA (74bp)
transferRNA Pro
PLM3_127_b2_sep16_scaffold_5564_19
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(18900..19244)
DNA (345bp) protein (115aa)
transcriptional regulator bin=bin1_lowGC species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
MerR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_5564_20
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(19307..19933)
DNA (627bp) protein (209aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] bin=bin1_lowGC species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
rnhB; ribonuclease HII RnhB (EC:3.1.26.4)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_5564_21
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(20077..20406)
DNA (330bp) protein (110aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_5564_22
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(20551..21426)
DNA (876bp) protein (292aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
dapA; dihydrodipicolinate synthase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_5564_23
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(21450..21995)
DNA (546bp) protein (182aa)
id=14425207 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_5564_24
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(22003..23025)
DNA (1023bp) protein (341aa)
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11)
hypothetical protein Tax=candidate division OP9 bacterium OP9-77CS RepID=UPI00037B3DCA
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
Displaying 25 items

View Taxonomy