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PLM3_127_b2_sep16_scaffold_3466

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3466_1
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1014
DNA (1014bp) protein (338aa)
FAD dependent oxidoreductase Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0N1_NITHN
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADE16354.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM3_127_b2_sep16_scaffold_3466_2
unknown

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1054..2121
DNA (1068bp) protein (356aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3466_3
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2243..3457
DNA (1215bp) protein (405aa)
Glycosyl transferase group 1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0M9_NITHN
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADE16352.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM3_127_b2_sep16_scaffold_3466_4
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

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3546..5063
DNA (1518bp) protein (506aa)
Glycosyl transferase family 39 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RQZ0_HALTV
glycosyl transferase family protein
Tax=RBG_16_Planctomycetes_43_13_curated
PLM3_127_b2_sep16_scaffold_3466_trna_2
unknown

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comp(5072..5146)
DNA (75bp)
transferRNA Glu
PLM3_127_b2_sep16_scaffold_3466_5
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(5287..6669)
DNA (1383bp) protein (461aa)
argH; argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] bin=bin1_lowGC species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
argH; argininosuccinate lyase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3466_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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6851..7183
DNA (333bp) protein (111aa)
id=14425880 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_7
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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7173..7625
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7V3_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM01341.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_127_b2_sep16_scaffold_3466_8
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(7640..8380)
DNA (741bp) protein (247aa)
id=14424904 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3466_9
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(8411..9304)
DNA (894bp) protein (298aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3466_trna_1
unknown

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9552..9623
DNA (72bp)
transferRNA Val
PLM3_127_b2_sep16_scaffold_3466_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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9686..10078
DNA (393bp) protein (131aa)
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] bin=bin1_lowGC species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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10087..11643
DNA (1557bp) protein (519aa)
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] bin=bin1_lowGC species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
threonyl-tRNA synthetase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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11628..12200
DNA (573bp) protein (191aa)
Translation initiation factor IF-3; K02520 translation initiation factor IF-3 bin=bin1_lowGC species=Selenomonas sp. FOBRC9 genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
translation initiation factor IF-3
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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12181..12384
DNA (204bp) protein (68aa)
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 bin=bin1_lowGC species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
rpmI; 50S ribosomal protein L35
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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12561..12914
DNA (354bp) protein (118aa)
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 bin=bin1_lowGC species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
50S ribosomal protein L20
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_15
CG_Elusi_03, Elusimicrobia, Bacteria

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comp(13010..13291)
DNA (282bp) protein (94aa)
Transposase bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
Tax=CG_Elusi_03
PLM3_127_b2_sep16_scaffold_3466_16
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(13684..14337)
DNA (654bp) protein (218aa)
HhH-GPD family protein; K07457 endonuclease III related protein bin=bin1_lowGC species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
endonuclease
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_17
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

14632..14901
DNA (270bp) protein (90aa)
glycine cleavage system protein T (EC:2.1.2.10); K00605 aminomethyltransferase [EC:2.1.2.10] bin=bin1_lowGC species=Thermoanaerobacter italicus genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_18
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

14946..15701
DNA (756bp) protein (252aa)
glycine cleavage system protein T (EC:2.1.2.10); K00605 aminomethyltransferase [EC:2.1.2.10] bin=bin1_lowGC species=Thermoanaerobacter italicus genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
glycine cleavage system T protein (EC:2.1.2.10)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3466_19
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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15723..16118
DNA (396bp) protein (132aa)
glycine cleavage system H protein; K02437 glycine cleavage system H protein bin=bin1_lowGC species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin1_lowGC organism_group=Unknown_CP
glycine cleavage system protein H
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_20
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

16423..19326
DNA (2904bp) protein (968aa)
glycine dehydrogenase, decarboxylating bin=bin1_lowGC species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
glycine dehydrogenase, decarboxylating
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_21
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(19323..20270)
DNA (948bp) protein (316aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_22
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(20372..23749)
DNA (3378bp) protein (1126aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] bin=bin1_lowGC species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
mfd; transcription-repair coupling factor
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_23
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(23770..24852)
DNA (1083bp) protein (361aa)
leuB; 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (EC:1.1.1.85)
3-isopropylmalate dehydrogenase bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_24
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

24964..26871
DNA (1908bp) protein (636aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3466_25
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(27026..27787)
DNA (762bp) protein (254aa)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BJV9_PETMO
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3466_26
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(27961..28701)
DNA (741bp) protein (247aa)
tRNA pseudouridine synthase A (EC:4.2.1.70); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] bin=bin1_lowGC species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3466_27
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(28707..29636)
DNA (930bp) protein (310aa)
binding-protein-dependent transporters inner membrane component; K02033 peptide/nickel transport system permease protein bin=bin1_lowGC species=Nitrospina sp. AB-629-B18 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin1_lowGC organism_group=Unknown_CP
ABC-type transporter, integral membrane subunit
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3466_28
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(29656..32610)
DNA (2955bp) protein (985aa)
carboxyl-terminal protease family protein; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] bin=bin1_lowGC species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin1_lowGC organism_group=Unknown_CP
peptidase s41a family protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
Displaying 30 items

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