ggKbase home page

PLM3_127_b2_sep16_scaffold_3608

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3608_1
unknown

Not on your lists

comp(2..91)
DNA (90bp) protein (30aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3608_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(275..1129)
DNA (855bp) protein (285aa)
apurinic endonuclease APN1 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin1_lowGC organism_group=Unknown_CP
apurinic endonuclease APN1
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3608_3
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

1327..1875
DNA (549bp) protein (183aa)
Arginine decarboxylase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQA5_KORVE
pyruvoyl-dependent arginine decarboxylase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3608_4
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(1895..3553)
DNA (1659bp) protein (553aa)
DNA replication and repair protein RecN bin=GWC2_Nitrospirae_57_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
DNA recombination protein RecN
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3608_5
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(3559..4908)
DNA (1350bp) protein (450aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily; K03086 RNA polymerase primary sigma factor bin=bin1_lowGC species=Oscillibacter sp. CAG:155 genus=Oscillibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
RpoD subfamily RNA polymerase sigma-70 subunit
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3608_6
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(4930..6222)
DNA (1293bp) protein (431aa)
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase bin=GWC2_Deltaproteobacteria_55_46 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3608_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

6447..7832
DNA (1386bp) protein (462aa)
GabT; 4-aminobutyrate aminotransferase and related aminotransferases; K07250 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase [EC:2.6.1.19 2.6.1.22] bin=bin1_lowGC species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
GabT; 4-aminobutyrate aminotransferase and related aminotransferases
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3608_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

7914..9392
DNA (1479bp) protein (493aa)
gbsA; glycine betaine aldehyde dehydrogenase (EC:1.2.1.8) bin=bin1_lowGC species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3608_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

9472..10209
DNA (738bp) protein (246aa)
Spermidine/putrescine import ATP-binding protein potA; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31] bin=bin1_lowGC species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=bin1_lowGC organism_group=Unknown_CP
spermidine/putrescine import ATP-binding protein PotA (EC:3.6.3.31)
Tax=CSP1_2_Dadabacteria
Displaying 9 items

View Taxonomy