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PLM3_127_b2_sep16_scaffold_3656

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_3656_1
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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1..375
DNA (375bp) protein (125aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein bin=bin1_lowGC species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
periplasmic binding protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3656_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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525..1295
DNA (771bp) protein (257aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] bin=bin1_lowGC species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
ABC transporter
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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1485..2513
DNA (1029bp) protein (343aa)
transport system permease; K02015 iron complex transport system permease protein bin=bin1_lowGC species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin1_lowGC organism_group=Unknown_CP
transport system permease
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_4
unknown

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comp(2546..2641)
DNA (96bp) protein (32aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3656_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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2959..3378
DNA (420bp) protein (140aa)
id=14426694 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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3444..4421
DNA (978bp) protein (326aa)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.180)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_7
unknown

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comp(4610..4879)
DNA (270bp) protein (90aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_3656_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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5029..6336
DNA (1308bp) protein (436aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] bin=bin1_lowGC species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
3-phosphoshikimate 1-carboxyvinyltransferase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

6498..7166
DNA (669bp) protein (223aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] bin=bin1_lowGC species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
cytidylate kinase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists


7174..8844
DNA (1671bp) protein (557aa)
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1 bin=bin1_lowGC species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
rpsA; 30S ribosomal protein S1
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

8867..9748
DNA (882bp) protein (294aa)
sppA; signal peptide peptidase SppA, 67K type; K04773 protease IV [EC:3.4.21.-] bin=bin1_lowGC species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
signal peptide peptidase SppA, 36K type (EC:3.1.3.2)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

9751..10236
DNA (486bp) protein (162aa)
Histidine triad (HIT) protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Marinimicrobia tax=bin1_lowGC organism_group=Unknown_CP
hit family protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

10240..10602
DNA (363bp) protein (121aa)
Uncharacterized protein bin=bin1_lowGC species=Desulfovibrio sp. X2 genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_3656_14
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

10673..11608
DNA (936bp) protein (312aa)
lipA; lipoate synthase (EC:2.8.1.-); K03644 lipoic acid synthetase [EC:2.8.1.8] bin=bin1_lowGC species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
lipoic acid synthetase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_3656_15
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(11616..11837)
DNA (222bp) protein (74aa)
Tax=CG_Nitrosp_02
PLM3_127_b2_sep16_scaffold_3656_16
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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12362..12544
DNA (183bp) protein (61aa)
Prevent-host-death family protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G898_GEOUR
prevent-host-death family protein
Tax=CG_Ignavi_01
Displaying 16 items

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