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PLM3_127_b2_sep16_scaffold_4346

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4346_1
Takifugu rubripes, Takifugu, Tetraodontiformes, Neopterygii, Chordata, Metazoa

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comp(3..464)
DNA (462bp) protein (154aa)
Chromosome 14 SCAF7218, whole genome shotgun sequence Tax=Tetraodon nigroviridis RepID=Q4TB06_TETNG
Uncharacterized protein {ECO:0000313|Ensembl:ENSTRUP00000038380}; Flags: Fragment;; species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu.;" source="Takifugu rubripes (Japanese pufferfish) (Fugu rubripes).;"
PLM3_127_b2_sep16_scaffold_4346_2
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(540..1031)
DNA (492bp) protein (164aa)
Uncharacterized protein Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G8F7_CHLAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL24219.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
PLM3_127_b2_sep16_scaffold_4346_3
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(1149..1676)
DNA (528bp) protein (176aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI000348211E
Pentapeptide repeat family protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_4346_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(1727..2353)
DNA (627bp) protein (209aa)
hypothetical protein bin=bin1_lowGC species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(2447..3268)
DNA (822bp) protein (274aa)
Acetoacetate decarboxylase (ADC) bin=bin1_lowGC species=Natronorubrum tibetense genus=Natronorubrum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
Acetoacetate decarboxylase (ADC)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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3459..5891
DNA (2433bp) protein (811aa)
peptidase S16, lon-like protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
peptidase S16, lon-like protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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5896..7260
DNA (1365bp) protein (455aa)
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms bin=bin1_lowGC species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
DNA repair protein RadA
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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7497..8411
DNA (915bp) protein (305aa)
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3] bin=bin1_lowGC species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
glutamate racemase (EC:5.1.1.3)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_9
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(8469..9104)
DNA (636bp) protein (212aa)
FixB; electron transfer flavoprotein, alpha subunit; K03522 electron transfer flavoprotein alpha subunit bin=bin1_lowGC species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
electron transfer flavoprotein subunit alpha/beta
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_4346_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(9131..9439)
DNA (309bp) protein (103aa)
FixB; electron transfer flavoprotein, alpha subunit; K03522 electron transfer flavoprotein alpha subunit bin=bin1_lowGC species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
electron transfer flavoprotein, alpha subunit
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(9470..9721)
DNA (252bp) protein (84aa)
electron transfer flavoprotein, beta subunit bin=bin1_lowGC species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

10573..11379
DNA (807bp) protein (269aa)
hypothetical protein; K06966 bin=bin1_lowGC species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_13
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

11372..12259
DNA (888bp) protein (296aa)
hypothetical protein bin=bin1_lowGC species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_4346_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12293..13090)
DNA (798bp) protein (266aa)
Phosphonate ABC transporter permease protein phnE Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDN6_PELHB
Phosphonate ABC transporter, permease protein {ECO:0000313|EMBL:KFC63760.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphonate ABC transporter permease protein phnE
PLM3_127_b2_sep16_scaffold_4346_15

Not on your lists

comp(13098..13937)
DNA (840bp) protein (280aa)
phosphonate ABC transporter ATPase (EC:3.6.3.28)
hypothetical protein Tax=Salinicoccus albus RepID=UPI0003648216
Phosphonate ABC transporter {ECO:0000313|EMBL:KGA16239.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
PLM3_127_b2_sep16_scaffold_4346_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13953..14840)
DNA (888bp) protein (296aa)
Phosphonate ABC transporter phosphate-binding periplasmic component Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDN4_PELHB
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:KFC63758.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphonate ABC transporter phosphate-binding periplasmic component
PLM3_127_b2_sep16_scaffold_4346_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14858..16747)
DNA (1890bp) protein (630aa)
cytochrome C Tax=Loktanella hongkongensis RepID=UPI00035C4D58
Cytochrome c Hsc {ECO:0000313|EMBL:KFC63757.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_4346_18
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(16768..17457)
DNA (690bp) protein (230aa)
DtxR family iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator bin=bin1_lowGC species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
DtxR family iron (metal) dependent repressor
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_19
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(17570..18415)
DNA (846bp) protein (282aa)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_4346_20
unknown

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comp(18920..19171)
DNA (252bp) protein (84aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4346_21
unknown

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comp(19352..19855)
DNA (504bp) protein (168aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4346_22
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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20296..21162
DNA (867bp) protein (289aa)
menB; naphthoate synthase (EC:4.1.3.36); K01661 naphthoate synthase [EC:4.1.3.36] bin=bin1_lowGC species=Rhodococcus sp. genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin1_lowGC organism_group=Unknown_CP
menB; naphthoate synthase (EC:4.1.3.36)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4346_23
unknown

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comp(21936..22124)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4346_24
R_OP3X_51_18, OP3X, Bacteria

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comp(22381..22644)
DNA (264bp) protein (88aa)
Tax=RIFCSPHIGHO2_02_FULL_OP3X_51_18_curated
PLM3_127_b2_sep16_scaffold_4346_25
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

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comp(23238..23612)
DNA (375bp) protein (125aa)
ppd:Ppro_1316 type III restriction enzyme, res subunit bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
Type III restriction protein res subunit {ECO:0000313|EMBL:KKT82708.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
hypothetical protein
Displaying 25 items

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