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PLM3_127_b2_sep16_scaffold_4773

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4773_1
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..164)
DNA (162bp) protein (54aa)
Tail sheath protein Tax=Chloroflexus RepID=A9WF53_CHLAA
Tail sheath protein {ECO:0000313|EMBL:KJZ39866.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
tail sheath protein
PLM3_127_b2_sep16_scaffold_4773_2
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

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comp(437..724)
DNA (288bp) protein (96aa)
Uncharacterized protein bin=GWD2_Nitrospirae-related_57_8 species=Rhodanobacter spathiphylli genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
Tax=GWC2_Nitrospirae_57_9_curated
PLM3_127_b2_sep16_scaffold_4773_3
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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comp(918..2312)
DNA (1395bp) protein (465aa)
Helix-turn-helix, Fis-type bin=GWD2_Nitrospirae-related_57_8 species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
sigma-54 dependent transcriptional regulator
Tax=GWC2_Nitrospirae_57_13_curated
PLM3_127_b2_sep16_scaffold_4773_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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2754..3833
DNA (1080bp) protein (360aa)
nitrogen-specific signal transduction histidine kinase NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] bin=bin1_lowGC species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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3887..5329
DNA (1443bp) protein (481aa)
two component, sigma54 specific, Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG bin=bin1_lowGC species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
gnfM; nitrogen fixation master sigma-54-dependent transcriptional response regulator
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(5361..6026)
DNA (666bp) protein (222aa)
ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] bin=bin1_lowGC species=Cellulosilyticum lentocellum genus=Cellulosilyticum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
RNAse III (EC:3.1.26.3)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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6288..6626
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1 bin=bin1_lowGC species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
glnB; nitrogen regulatory protein P-II
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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6731..8152
DNA (1422bp) protein (474aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] bin=bin1_lowGC species=Halomonas anticariensis genus=Halomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
glutamine synthetase, type I
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(8184..9926)
DNA (1743bp) protein (581aa)
proton-translocating NADH-quinone oxidoreductase subunit L bin=bin1_lowGC species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
nuoL; NADH dehydrogenase I subunit L
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(10429..10974)
DNA (546bp) protein (182aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] bin=bin1_lowGC species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin1_lowGC organism_group=Unknown_CP
NADH dehydrogenase subunit j
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(11109..11774)
DNA (666bp) protein (222aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] bin=bin1_lowGC species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin1_lowGC organism_group=Unknown_CP
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(11862..13046)
DNA (1185bp) protein (395aa)
RNA polymerase, sigma 70 subunit, RpoD bin=bin1_lowGC species=unknown genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(13203..13970)
DNA (768bp) protein (256aa)
id=14426091 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_4773_14
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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14041..14538
DNA (498bp) protein (166aa)
id=14425440 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
Displaying 14 items

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