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PLM3_127_b2_sep16_scaffold_1170

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1170_1
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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42..1730
DNA (1689bp) protein (563aa)
GMC oxidoreductase family Tax=Methylophaga thiooxydans DMS010 RepID=C0N2R5_9GAMM
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1170_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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2000..3103
DNA (1104bp) protein (368aa)
SMF family protein involved in DNA uptake; K04096 DNA processing protein bin=bin1_lowGC species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin1_lowGC organism_group=Unknown_CP
SMF family protein involved in DNA uptake
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1170_3
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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3218..3577
DNA (360bp) protein (120aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
UDP-glucose 6-dehydrogenase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3W9_GEOUR
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1170_4
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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3553..4512
DNA (960bp) protein (320aa)
UDP-glucose 6-dehydrogenase Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AJP7_GEOSK
ugd; UDP-glucose 6-dehydrogenase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1170_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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4762..6873
DNA (2112bp) protein (704aa)
putative DNA protecting protein DprA/DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
DNA topoisomerase I (EC:5.99.1.2)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1170_6
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

6918..9473
DNA (2556bp) protein (852aa)
ATP-dependent DNA helicase RecG Tax=Geobacter metallireducens RepID=Q39UR6_GEOMG
recG; ATP-dependent DNA helicase RecG
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1170_7
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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comp(9586..10851)
DNA (1266bp) protein (422aa)
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5T5_SPHTD
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1170_8
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(10870..13665)
DNA (2796bp) protein (932aa)
sucA; 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI000363A736
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_1170_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

13924..14850
DNA (927bp) protein (309aa)
ABC transporter ATPase (EC:3.6.3.-); K09687 antibiotic transport system ATP-binding protein bin=bin1_lowGC species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
ABC transporter
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1170_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

14851..15603
DNA (753bp) protein (251aa)
ABC-2 type transporter; K01992 ABC-2 type transport system permease protein bin=bin1_lowGC species=unknown genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin1_lowGC organism_group=Unknown_CP
multi-copper enzyme maturation ABC transporter permease
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1170_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

15600..16964
DNA (1365bp) protein (455aa)
gliding motility ABC transporter auxillary protein bin=bin1_lowGC species=unknown genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin1_lowGC organism_group=Unknown_CP
gliding motility ABC transporter auxillary protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1170_12

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17007..17360
DNA (354bp) protein (118aa)
Marine sediment metagenome DNA, contig: S06H3_L05711 {ECO:0000313|EMBL:GAI08126.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=ACD9 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=ACD9 organism_group=OD1-i organism_desc=OD1-i
S23 ribosomal protein
PLM3_127_b2_sep16_scaffold_1170_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

17546..18817
DNA (1272bp) protein (424aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1170_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists


comp(18830..20623)
DNA (1794bp) protein (598aa)
aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] bin=bin1_lowGC species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
aspartyl-tRNA synthetase (EC:6.1.1.12)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1170_15
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

20856..21440
DNA (585bp) protein (195aa)
hypothetical protein Tax=candidate division KSB1 RepID=UPI00035D8CEA
transposase
Tax=RBG_16_RIF03_38_10_curated
PLM3_127_b2_sep16_scaffold_1170_16
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

21418..22323
DNA (906bp) protein (302aa)
era; GTP-binding protein Era; K03595 GTP-binding protein Era bin=bin1_lowGC species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
era; GTP-binding protein Era
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_1170_17
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

22515..23021
DNA (507bp) protein (169aa)
nitroreductase bin=bin1_lowGC species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
nitroreductase
Tax=CSP1_2_Dadabacteria
Displaying 17 items

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