ggKbase home page

PLM3_127_b2_sep16_scaffold_8509

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_8509_1
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

1..513
DNA (513bp) protein (171aa)
Two-component sensor kinase Tax=planctomycete KSU-1 RepID=I3IGL4_9PLAN
histidine kinase
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_8509_2
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

479..2383
DNA (1905bp) protein (635aa)
Sensory box histidine kinase/response regulator Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QAZ9_DESAH
sensory box histidine kinase/response regulator
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_8509_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(2402..5134)
DNA (2733bp) protein (911aa)
uvrA; excinuclease ABC subunit A; K03701 excinuclease ABC subunit A bin=bin1_lowGC species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
uvrA; excinuclease ABC subunit A
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8509_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(5313..5861)
DNA (549bp) protein (183aa)
HAD-superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily bin=bin1_lowGC species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=bin1_lowGC organism_group=Unknown_CP
HAD-superfamily hydrolase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8509_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

6135..7382
DNA (1248bp) protein (416aa)
glyA; serine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] bin=bin1_lowGC species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8509_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

7383..7928
DNA (546bp) protein (182aa)
transcriptional regulator NrdR bin=bin1_lowGC species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
nrdR; transcriptional repressor NrdR
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8509_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

7921..8724
DNA (804bp) protein (268aa)
deoxyribonuclease, TatD family; K03424 TatD DNase family protein [EC:3.1.21.-] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
TatD family deoxyribonuclease
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8509_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

8791..9774
DNA (984bp) protein (328aa)
pdxA; protein PdxA (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] bin=bin1_lowGC species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8509_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(9792..10535)
DNA (744bp) protein (248aa)
silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-] bin=bin1_lowGC species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
silent information regulator protein Sir2
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_8509_10
unknown

Not on your lists

10696..10866
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_8509_11
unknown

Not on your lists

10973..11395
DNA (423bp) protein (141aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_8509_12
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

comp(11486..11881)
DNA (396bp) protein (132aa)
Probable ribonuclease VapC bin=GWC2_CP_Nitrospirae-rel_42_7 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
pilT2; protein PilT
Tax=GWC2_Nitrospirae_42_7_curated
PLM3_127_b2_sep16_scaffold_8509_13
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(11878..12099)
DNA (222bp) protein (74aa)
Prevent-host-death protein {ECO:0000313|EMBL:KGM42828.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Displaying 13 items

View Taxonomy