ggKbase home page

PLM3_127_b2_sep16_scaffold_837

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_837_1
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(276..1178)
DNA (903bp) protein (301aa)
Putative uncharacterized protein Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60BQ7_METCA
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_837_2
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

1489..2370
DNA (882bp) protein (294aa)
acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8] bin=bin1_lowGC species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
acetylglutamate kinase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

2436..3584
DNA (1149bp) protein (383aa)
acetylornithine aminotransferase (EC:2.6.1.11); K00818 acetylornithine aminotransferase [EC:2.6.1.11] bin=bin1_lowGC species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
acetylornithine aminotransferase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_4
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

3565..4479
DNA (915bp) protein (305aa)
ornithine carbamoyltransferase (EC:2.1.3.3); K00611 ornithine carbamoyltransferase [EC:2.1.3.3] bin=bin1_lowGC species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
ornithine carbamoyltransferase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_5
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(4476..6290)
DNA (1815bp) protein (605aa)
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin1_lowGC organism_group=Unknown_CP
uvrC; excinuclease ABC subunit C
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_6
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(6491..6760)
DNA (270bp) protein (90aa)
id=14426202 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_7
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(6859..7161)
DNA (303bp) protein (101aa)
stress responsive alpha-beta barrel domain-containing protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin1_lowGC organism_group=Unknown_CP
stress responsive alpha-beta barrel domain-containing protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(7397..9895)
DNA (2499bp) protein (833aa)
phosphoglucomutase/phosphomannomutase family protein; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] bin=bin1_lowGC species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
phosphoglucomutase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(9892..10260)
DNA (369bp) protein (123aa)
response regulator receiver protein bin=bin1_lowGC species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
response regulator receiver protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_10
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(10263..11870)
DNA (1608bp) protein (536aa)
GAF sensor signal transduction histidine kinase bin=bin1_lowGC species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
sensor histidine kinase, GAF domain-containing
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_11
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(11962..12345)
DNA (384bp) protein (128aa)
hypothetical protein; K01971 DNA ligase (ATP) [EC:6.5.1.1] bin=bin1_lowGC species=Methanoplanus petrolearius genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
ATP-dependent DNA ligase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_12
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(12329..13093)
DNA (765bp) protein (255aa)
pantothenate kinase (EC:2.7.1.33); K03525 type III pantothenate kinase [EC:2.7.1.33] bin=bin1_lowGC species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
putative Baf family transcriptional acitvator
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_13
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(13120..15366)
DNA (2247bp) protein (749aa)
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_14
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(15551..16729)
DNA (1179bp) protein (393aa)
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor bin=bin1_lowGC species=Thermanaerovibrio acidaminovorans genus=Thermanaerovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=bin1_lowGC organism_group=Unknown_CP
RNA polymerase sigma factor RpoD
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_15
unknown

Not on your lists

comp(16803..16943)
DNA (141bp) protein (47aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_837_16
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

17152..17352
DNA (201bp) protein (67aa)
id=14426160 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_17
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

17482..18408
DNA (927bp) protein (309aa)
galE; UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] bin=bin1_lowGC species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=bin1_lowGC organism_group=Unknown_CP
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_18
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

18438..19445
DNA (1008bp) protein (336aa)
putative o-methyltransferase (EC:2.1.1.-) bin=bin1_lowGC species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
O-methyltransferase family protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_19
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

19514..19720
DNA (207bp) protein (69aa)
id=14426152 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_20
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

19717..19926
DNA (210bp) protein (70aa)
id=14426153 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_21
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(19938..21470)
DNA (1533bp) protein (511aa)
GMP synthase, large subunit; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] bin=bin1_lowGC species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
GMP synthase, large subunit
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_22
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(21697..23163)
DNA (1467bp) protein (489aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] bin=bin1_lowGC species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_837_23
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(23170..23550)
DNA (381bp) protein (127aa)
id=14426157 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_127_b2_sep16_scaffold_837_24
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(23732..24835)
DNA (1104bp) protein (368aa)
id=14426159 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_25
unknown

Not on your lists

comp(25128..25298)
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_837_26
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(25276..26637)
DNA (1362bp) protein (454aa)
amtB; ammonium transport protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
amtB; ammonium transport protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_27
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

27075..29183
DNA (2109bp) protein (703aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
ATPase
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_28
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(29190..30179)
DNA (990bp) protein (330aa)
aminodeoxychorismate lyase; K07082 UPF0755 protein bin=bin1_lowGC species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_127_b2_sep16_scaffold_837_29
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

comp(30190..31335)
DNA (1146bp) protein (382aa)
proB; glutamate 5-kinase; K00931 glutamate 5-kinase [EC:2.7.2.11] bin=bin1_lowGC species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
proB; gamma-glutamyl kinase
Tax=CSP1_2_Dadabacteria
Displaying 29 items

View Taxonomy