ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

PLM3_127_b2_sep16_scaffold_5681

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_5681_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(514..1173)
DNA (660bp) protein (220aa)
Transcriptional Regulator, TetR family protein Tax=Limnobacter sp. MED105 RepID=A6GMZ7_9BURK
TetR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_5681_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1430..2638
DNA (1209bp) protein (403aa)
hemolysin D Tax=Aquaspirillum serpens RepID=UPI0003B78152
multidrug efflux membrane permease
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_5681_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2651..5851
DNA (3201bp) protein (1067aa)
Hydrophobe/amphiphile efflux-1 family protein Tax=Limnobacter sp. MED105 RepID=A6GMZ5_9BURK
hydrophobe/amphiphile efflux-1 family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_5681_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5848..7293
DNA (1446bp) protein (482aa)
RND efflux system, outer membrane lipoprotein, NodT family Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DQI6_DESVM
NodT family RND efflux system outer membrane lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_5681_5
unknown

Not on your lists

7572..7886
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5681_6
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8073..9437
DNA (1365bp) protein (455aa)
tryptophan synthase subunit beta Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002627B13
tryptophan synthase subunit beta
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_5681_7
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9791..10312
DNA (522bp) protein (174aa)
Tfp pilus assembly protein major pilin PilA Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4WS16_PSEDE
Tfp pilus assembly protein major pilin PilA
Tfp pilus assembly protein major pilin PilA {ECO:0000313|EMBL:AGI22868.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
PLM3_127_b2_sep16_scaffold_5681_8
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

10434..11441
DNA (1008bp) protein (336aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CVN6_TRURR
pyridoxal-5'-phosphate-dependent protein subunit beta
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:ADI15947.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
PLM3_127_b2_sep16_scaffold_5681_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11636..12670)
DNA (1035bp) protein (345aa)
Histone deacetylase superfamily protein Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EVU6_9PROT
histone deacetylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_5681_10
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12681..12986)
DNA (306bp) protein (102aa)
Putative uncharacterized protein Tax=Nitrosomonas sp. AL212 RepID=F9ZD50_9PROT
hypothetical protein
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_5681_11
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12986..14074)
DNA (1089bp) protein (363aa)
Radical SAM domain protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNP4_SIDLE
radical SAM domain protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_5681_12
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14192..14599)
DNA (408bp) protein (136aa)
h16_A3005; aylformamidase (EC:3.5.1.9)
Putative aylformamidase Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K7E0_CUPNH
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
Displaying 12 items

View Taxonomy