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PLM3_127_b2_sep16_scaffold_2085

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2085_1
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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2..241
DNA (240bp) protein (80aa)
Amino acid permease superfamily Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J019_POLGS
amino acid permease
Amino acid permease superfamily {ECO:0000313|EMBL:ADZ71854.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
PLM3_127_b2_sep16_scaffold_2085_2
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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646..1572
DNA (927bp) protein (309aa)
Cobalamin biosynthesis protein CobD Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJA3_AZOSU
cobalamin biosynthesis protein cobD/CbiB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_2085_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1586..2491)
DNA (906bp) protein (302aa)
Putative ribosome biogenesis GTPase RsgA Tax=Sulfuricella denitrificans skB26 RepID=S6AHX4_9PROT
ribosome biogenesis GTPase RsgA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_2085_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2575..2916)
DNA (342bp) protein (114aa)
Putative pterin-4-alpha-carbinolamine dehydratase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=PHS_NITMU
pterin-4-alpha-carbinolamine dehydratase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_2085_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3173..4423)
DNA (1251bp) protein (417aa)
M48 family peptidase (EC:3.4.-.-)
Peptidase family M48 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82Y14_NITEU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_2085_6

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4503..5048
DNA (546bp) protein (182aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
orn; oligoribonuclease (EC:3.1.-.-)
Oligoribonuclease Tax=uncultured bacterium RepID=Q84CX8_9BACT
PLM3_127_b2_sep16_scaffold_2085_7
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5222..5428)
DNA (207bp) protein (69aa)
Uncharacterized protein Tax=Ralstonia pickettii DTP0602 RepID=U3QQ46_RALPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW93165.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
PLM3_127_b2_sep16_scaffold_2085_8

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comp(5425..7029)
DNA (1605bp) protein (535aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase Tax=uncultured bacterium RepID=Q84CX7_9BACT
PLM3_127_b2_sep16_scaffold_2085_9
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7243..7776)
DNA (534bp) protein (178aa)
Phasin family protein Tax=Thauera RepID=N6YMN2_9RHOO
hypothetical protein
Tax=GWA2_Rhodocyclales_65_20_curated
PLM3_127_b2_sep16_scaffold_2085_10
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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7999..8748
DNA (750bp) protein (250aa)
Transmembrane protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CR85_SIDLE
transmembrane protein
Transmembrane protein {ECO:0000313|EMBL:ADE11471.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
PLM3_127_b2_sep16_scaffold_2085_11
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8982..9473)
DNA (492bp) protein (164aa)
RNA-binding S4 domain protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZ35_HALO1
RNA-binding S4 domain-containing protein
RNA-binding S4 domain protein {ECO:0000313|EMBL:ACY14505.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM3_127_b2_sep16_scaffold_2085_12
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9750..10619)
DNA (870bp) protein (290aa)
Hsp33 protein Tax=Sulfuricella denitrificans skB26 RepID=S6AAP0_9PROT
Hsp33 protein
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_2085_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10616..12277)
DNA (1662bp) protein (554aa)
Transmembrane protein Tax=Sulfuricella denitrificans skB26 RepID=S6AJ43_9PROT
transmembrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_2085_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12483..12710)
DNA (228bp) protein (76aa)
50S ribosomal protein L31 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL31_NITMU
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
rpmE; 50S ribosomal protein L31
PLM3_127_b2_sep16_scaffold_2085_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13542..14027)
DNA (486bp) protein (162aa)
Transcription termination factor Rho (Fragment) Tax=mine drainage metagenome RepID=T0YBU0_9ZZZZ
rho; transcription termination factor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Displaying 15 items

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