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PLM3_127_b2_sep16_scaffold_4516

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4516_1
unknown

Not on your lists

1..186
DNA (186bp) protein (62aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4516_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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439..1446
DNA (1008bp) protein (336aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_4516_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1877..2143
DNA (267bp) protein (89aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1YBW5_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_4516_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2222..3229
DNA (1008bp) protein (336aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_4516_5
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3303..4670
DNA (1368bp) protein (456aa)
Glutamine synthetase Tax=alpha proteobacterium BAL199 RepID=A8TX85_9PROT
Glutamine synthetase {ECO:0000313|EMBL:EDP63000.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
L-glutamine synthetase
PLM3_127_b2_sep16_scaffold_4516_6
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5381..6229
DNA (849bp) protein (283aa)
Aldehyde Dehydrogenase Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EAW3_RUNSL
aldehyde dehydrogenase
Aldehyde Dehydrogenase {ECO:0000313|EMBL:AEI48826.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
PLM3_127_b2_sep16_scaffold_4516_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6457..7635
DNA (1179bp) protein (393aa)
Putative alcohol dehydrogenase Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3B1I2_PSEAC
Alcohol dehydrogenase {ECO:0000313|EMBL:KGM32987.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
alcohol dehydrogenase
PLM3_127_b2_sep16_scaffold_4516_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

8081..8617
DNA (537bp) protein (179aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_127_b2_sep16_scaffold_4516_9
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8952..9950
DNA (999bp) protein (333aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRK2_9BURK
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EHR72247.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
PLM3_127_b2_sep16_scaffold_4516_10
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10147..10854
DNA (708bp) protein (236aa)
MotA/TolQ/ExbB proton channel Tax=Burkholderia graminis C4D1M RepID=B1G6P8_9BURK
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EDT08109.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
MotA/TolQ/ExbB proton channel
PLM3_127_b2_sep16_scaffold_4516_11
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10851..11267
DNA (417bp) protein (139aa)
hypothetical protein Tax=Burkholderia sp. JPY347 RepID=UPI00036ECB3F
biopolymer transporter ExbD
Transport energizing protein, ExbD family {ECO:0000313|EMBL:EJL07492.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis subsp. aureofaciens 30-84.;"
PLM3_127_b2_sep16_scaffold_4516_12
Serratia fonticola, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11264..12067
DNA (804bp) protein (268aa)
TonB family protein Tax=Serratia marcescens FGI94 RepID=L0MIX5_SERMA
Energy transducer TonB {ECO:0000313|EMBL:AKG71616.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia fonticola.;"
TonB family protein
PLM3_127_b2_sep16_scaffold_4516_13
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12371..13987
DNA (1617bp) protein (539aa)
Acetyl-coenzyme A synthetase Tax=Azospirillum brasilense Sp245 RepID=G8ATM2_AZOBR
AMP-dependent synthetase
AMP-dependent synthetase {ECO:0000313|EMBL:AIB14266.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM3_127_b2_sep16_scaffold_4516_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

14101..15108
DNA (1008bp) protein (336aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_4516_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15105..16112
DNA (1008bp) protein (336aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_4516_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

16109..19012
DNA (2904bp) protein (968aa)
Histidine kinase,HAMP domain-containing protein,histidine kinase,cache domain-containing protein,GAF domain-containing protein bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. WSM1253 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two-component hybrid sensor and regulator
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_4516_17
unknown

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19009..19149
DNA (141bp) protein (47aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4516_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

19404..20519
DNA (1116bp) protein (372aa)
adenylate/guanylate cyclase bin=bin3_NC10 species=Methyloferula stellata genus=Methyloferula taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
adenylate/guanylate cyclase
Tax=CSP1_5_NC10
PLM3_127_b2_sep16_scaffold_4516_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(20631..21320)
DNA (690bp) protein (230aa)
peroxiredoxin Tax=Rhizobium sp. (strain BR816) RepID=UPI00036EC43E
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_4516_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(21457..22146)
DNA (690bp) protein (230aa)
Peroxiredoxin Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WDK7_RHILT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_4516_21
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(22197..23480)
DNA (1284bp) protein (428aa)
UPI0003CEA5B1 related cluster Tax=unknown RepID=UPI0003CEA5B1
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 21 items

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