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PLM3_127_b2_sep16_scaffold_1081

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1081_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..424)
DNA (423bp) protein (141aa)
ABC transporter permease Tax=Thiobacillus thioparus RepID=UPI000371C94C
yrbE; hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1081_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(426..1235)
DNA (810bp) protein (270aa)
ABC transporter Tax=Sulfuricella denitrificans skB26 RepID=S6B146_9PROT
ABC transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1081_3
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1357..2091
DNA (735bp) protein (245aa)
ATP binding cassette (Abc) transporter, putative Tax=Ricinus communis RepID=B9TCW4_RICCO
ABC transporter family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1081_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2162..3619
DNA (1458bp) protein (486aa)
Fis family transcriptional regulator Tax=Thiobacillus thioparus RepID=UPI000381D46A
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1081_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3620..5245
DNA (1626bp) protein (542aa)
Sporulation domain protein Tax=Methylotenera sp. (strain 301) RepID=D7DKR9_METS0
Sporulation domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1081_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5320..7212
DNA (1893bp) protein (631aa)
Putative Type II secretory pathway component PulD Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLB3_THIDA
Type II secretory pathway component PulD
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1081_7
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7502..7879)
DNA (378bp) protein (126aa)
Uncharacterized protein Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W1C5_UNCMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ37818.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
PLM3_127_b2_sep16_scaffold_1081_8
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8041..8433
DNA (393bp) protein (131aa)
Putative uncharacterized protein bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
TPR repeat-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1081_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8452..10155
DNA (1704bp) protein (568aa)
secretion system protein E Tax=Methylotenera sp. 1P/1 RepID=UPI000370F2CE
type II secretion system protein E
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1081_10
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10231..11436
DNA (1206bp) protein (402aa)
Type II secretion system protein Tax=Methylovorus RepID=C6X861_METSD
type II secretion system protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1081_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11439..12992
DNA (1554bp) protein (518aa)
hypothetical protein Tax=Methylotenera RepID=UPI00036D0D0D
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1081_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12999..13610
DNA (612bp) protein (204aa)
hypothetical protein Tax=Methylotenera sp. 1P/1 RepID=UPI000378F956
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1081_13
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13562..14140
DNA (579bp) protein (193aa)
hypothetical protein
Putative uncharacterized protein bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM3_127_b2_sep16_scaffold_1081_14
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14137..15375
DNA (1239bp) protein (413aa)
Uncharacterized protein bin=GWE2_Gallionellales_58_10 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
conserved hypothetical protein, membrane or secreted
Tax=GWA2_Gallionellales_60_18_curated
PLM3_127_b2_sep16_scaffold_1081_15
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15395..16081
DNA (687bp) protein (229aa)
Uncharacterized protein Tax=Janthinobacterium sp. HH01 RepID=L9P9L1_9BURK
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1081_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16087..17829)
DNA (1743bp) protein (581aa)
hypothetical protein bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1081_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17874..18686
DNA (813bp) protein (271aa)
hypothetical protein Tax=Janthinobacterium lividum RepID=UPI00028868B9
putative membrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1081_18
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18693..19442
DNA (750bp) protein (250aa)
hypothetical protein Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003826ABC
putative uncharacterized protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
PLM3_127_b2_sep16_scaffold_1081_19
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19685..20401
DNA (717bp) protein (239aa)
hypothetical protein Tax=Thiobacillus thioparus RepID=UPI00037F6F86
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1081_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20454..22427)
DNA (1974bp) protein (658aa)
Potassium efflux system protein Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GDZ6_NITSI
potassium efflux system protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1081_21
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22562..23551
DNA (990bp) protein (330aa)
arabinose-5-phosphate isomerase (EC:5.3.1.13)
Arabinose-5-phosphate isomerase Tax=Sulfuricella denitrificans skB26 RepID=S6AIP1_9PROT
Tax=CG_Beta_01
PLM3_127_b2_sep16_scaffold_1081_22
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23599..24126
DNA (528bp) protein (176aa)
phosphatase KdsC; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (EC:3.1.3.45)
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1081_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24123..24749
DNA (627bp) protein (209aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6B131_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1081_24
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24706..25341
DNA (636bp) protein (212aa)
OstA-like protein Tax=Sulfuricella denitrificans skB26 RepID=S6AEZ8_9PROT
OstA-like protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1081_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25391..26113
DNA (723bp) protein (241aa)
Lipopolysaccharide ABC transporter, ATP-binding protein LptB Tax=Nitrosospira sp. APG3 RepID=M5DFA9_9PROT
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1081_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26166..27611
DNA (1446bp) protein (482aa)
RNA polymerase sigma-54 factor Tax=Nitrosospira sp. APG3 RepID=M5DQL5_9PROT
RNA polymerase sigma-54 factor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1081_27
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27638..27964
DNA (327bp) protein (109aa)
hypothetical protein Tax=Chitiniphilus shinanonensis RepID=UPI000369BF5A
sigma 54 modulation protein
Sigma 54 modulation protein {ECO:0000313|EMBL:BAN34403.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_1081_28
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27994..28290
DNA (297bp) protein (99aa)
Nitrogen regulatory protein {ECO:0000313|EMBL:EXI68410.1}; EC=2.7.1.- {ECO:0000313|EMBL:EXI68410.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
PTS sugar transporter subunit IIA Tax=Aquaspirillum serpens RepID=UPI0003B77A77
PTS IIA-like nitrogen-regulatory protein PtsN
Displaying 28 items

View Taxonomy