ggKbase home page

PLM3_127_b2_sep16_scaffold_1228

Search features with annotation key words

Displaying items 31-48 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1228_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24281..25294
DNA (1014bp) protein (338aa)
Glycine cleavage T protein (Aminomethyl transferase) Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y887_NITMU
glycine cleavage T protein (aminomethyl transferase)
Glycine cleavage T protein (Aminomethyl transferase) {ECO:0000313|EMBL:ABB75034.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
PLM3_127_b2_sep16_scaffold_1228_30
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25315..25599
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=Azoarcus sp. KH32C RepID=H0PU70_9RHOO
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_1228_31
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25590..26387
DNA (798bp) protein (266aa)
Uncharacterized protein Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AGQ7_GEOSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJY70536.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM3_127_b2_sep16_scaffold_1228_32
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26623..27051)
DNA (429bp) protein (143aa)
GCN5-like N-acetyltransferase Tax=Thauera sp. 63 RepID=N6YKA9_9RHOO
acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_1228_33
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27089..27829)
DNA (741bp) protein (247aa)
fabG2; 3-ketoacyl-ACP reductase (EC:1.1.1.100)
FabG2 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1DD57_LARHH
3-oxoacyl-ACP synthase {ECO:0000313|EMBL:KIF82341.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
PLM3_127_b2_sep16_scaffold_1228_34
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27911..28402)
DNA (492bp) protein (164aa)
ErfK/YbiS/YcfS/YnhG Tax=Methyloversatilis universalis FAM5 RepID=F5R9I7_9RHOO
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:EGK73057.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
ErfK/YbiS/YcfS/YnhG
PLM3_127_b2_sep16_scaffold_1228_35
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28399..28860)
DNA (462bp) protein (154aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
CRISPR-associated protein Csn1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036E5FC6
CMP/dCMP deaminase zinc-binding protein
PLM3_127_b2_sep16_scaffold_1228_36
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28932..30515)
DNA (1584bp) protein (528aa)
GMP synthase [glutamine-hydrolyzing] Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRW7_SIDLE
GMP synthase, large subunit
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM3_127_b2_sep16_scaffold_1228_37
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30592..32052)
DNA (1461bp) protein (487aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Inosine-5'-monophosphate dehydrogenase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QPC0_AZOSU
inosine-5''-monophosphate dehydrogenase
PLM3_127_b2_sep16_scaffold_1228_38
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32157..32540
DNA (384bp) protein (128aa)
Putative uncharacterized protein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI27_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97706.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM3_127_b2_sep16_scaffold_1228_39
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32555..33049
DNA (495bp) protein (165aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6B375_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO37531.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1228_40
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33086..33382)
DNA (297bp) protein (99aa)
RnfH Tax=Methyloversatilis sp. NVD RepID=UPI00035E27E6
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1228_41
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33379..33816)
DNA (438bp) protein (146aa)
Cyclase/dehydrase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSC9_SIDLE
cyclase/dehydrase
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
PLM3_127_b2_sep16_scaffold_1228_42
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33908..34354
DNA (447bp) protein (149aa)
SsrA-binding protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=SSRP_NITMU
smpB; SsrA-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1228_43
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34624..35826)
DNA (1203bp) protein (401aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase Tax=Sulfuricella denitrificans skB26 RepID=S6AGX7_9PROT
PLM3_127_b2_sep16_scaffold_1228_44
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35836..36105)
DNA (270bp) protein (90aa)
Peptidase M50 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H045_METFK
peptidase M50
Peptidase M50 {ECO:0000313|EMBL:ABE50142.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
PLM3_127_b2_sep16_scaffold_1228_45
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36105..36488)
DNA (384bp) protein (128aa)
Zn-dependent protease Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QPW9_AZOSU
Zn-dependent protease
Tax=GWA2_Rhodocyclales_65_20_curated
PLM3_127_b2_sep16_scaffold_1228_46
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36485..36850)
DNA (366bp) protein (122aa)
YciO family Tax=Nitrosospira sp. APG3 RepID=M5DEZ9_9PROT
Sua5/YciO/YrdC/YwlC family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Displaying items 31-48 of 48 in total

View Taxonomy