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PLM3_127_b2_sep16_scaffold_1228

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Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1228_1
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..610)
DNA (609bp) protein (203aa)
UPI0003CF2A34 related cluster Tax=unknown RepID=UPI0003CF2A34
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_127_b2_sep16_scaffold_1228_2
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(641..1453)
DNA (813bp) protein (271aa)
Tetratricopeptide TPR_2 repeat protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HFA0_ANADF
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABS27396.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM3_127_b2_sep16_scaffold_1228_3
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1488..2087
DNA (600bp) protein (200aa)
NADP oxidoreductase Tax=Hymenobacter norwichensis RepID=UPI0003B54516
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY39481.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
PLM3_127_b2_sep16_scaffold_1228_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2095..2868
DNA (774bp) protein (258aa)
Short-chain dehydrogenase/reductase SDR Tax=Pedosphaera parvula Ellin514 RepID=B9XJ35_9BACT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEF60073.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
short chain alcohol dehydrogenase-related dehydrogenase
PLM3_127_b2_sep16_scaffold_1228_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2904..3488
DNA (585bp) protein (195aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XJ34_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60072.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1228_6
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3588..4571
DNA (984bp) protein (328aa)
Uncharacterized protein Tax=Mycobacterium vaccae ATCC 25954 RepID=K0V5L2_MYCVA
Uncharacterized protein {ECO:0000313|EMBL:EJZ10083.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
ketosteroid isomerase
PLM3_127_b2_sep16_scaffold_1228_7
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4712..5260
DNA (549bp) protein (183aa)
Putative DNA-binding ferritin-like protein Tax=Herminiimonas arsenicoxydans RepID=A4G590_HERAR
stress response DNA-binding protein (Dps)
Putative DNA-binding ferritin-like protein {ECO:0000313|EMBL:CAL61677.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
PLM3_127_b2_sep16_scaffold_1228_trna_2
unknown

Not on your lists

comp(5325..5395)
DNA (71bp)
transferRNA Cys
PLM3_127_b2_sep16_scaffold_1228_trna_1
unknown

Not on your lists

comp(5546..5617)
DNA (72bp)
transferRNA Gly
PLM3_127_b2_sep16_scaffold_1228_8
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5676..6245)
DNA (570bp) protein (190aa)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:ADZ27313.1}; EC=2.7.8.5 {ECO:0000313|EMBL:ADZ27313.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase Tax=Nitrosomonas sp. AL212 RepID=F9ZH93_9PROT
PLM3_127_b2_sep16_scaffold_1228_9
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6253..8094)
DNA (1842bp) protein (614aa)
UvrABC system protein C Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=UVRC_NITMU
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
uvrC; excinuclease ABC subunit C
PLM3_127_b2_sep16_scaffold_1228_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8084..8764)
DNA (681bp) protein (227aa)
hypothetical protein bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1228_11
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8842..9408
DNA (567bp) protein (189aa)
Elongation factor P Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=EFP_NITMU
translation elongation factor P
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1228_12
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9419..10360)
DNA (942bp) protein (314aa)
Cation diffusion facilitator family transporter Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QL68_AZOSU
cation diffusion facilitator family transporter
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1228_13
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10353..11444)
DNA (1092bp) protein (364aa)
Beta-hexosaminidase {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00015774}; EC=3.2.1.52 {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00114579};; Beta-N-acetylhexosaminidase {ECO:0000256|HAMAP-Rule:MF_00364}; N-acetyl-beta-glucosaminidase {ECO:0000256|HAMAP-Rule:MF_00364}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
Beta-hexosaminidase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRD8_SIDLE
glycoside hydrolase family 3 domain protein
PLM3_127_b2_sep16_scaffold_1228_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11449..11826)
DNA (378bp) protein (126aa)
Holo-[acyl-carrier-protein] synthase Tax=Nitrosospira sp. APG3 RepID=M5DIV3_9PROT
holo-ACP synthase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1228_15
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11823..12563)
DNA (741bp) protein (247aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
Pyridoxine 5'-phosphate synthase Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5Q7_RAMTT
pyridoxine 5'-phosphate synthase PdxJ
PLM3_127_b2_sep16_scaffold_1228_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12560..13294)
DNA (735bp) protein (245aa)
DNA repair protein RecO Tax=Sulfuricella denitrificans skB26 RepID=S6AC38_9PROT
DNA repair protein RecO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1228_17
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13299..14189)
DNA (891bp) protein (297aa)
GTPase Era Tax=Azoarcus sp. KH32C RepID=H0PU18_9RHOO
era; GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
PLM3_127_b2_sep16_scaffold_1228_18
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14186..14860)
DNA (675bp) protein (225aa)
rnc1; ribonuclease III (RNase III) (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease 3; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Ribonuclease 3 Tax=Sulfuricella denitrificans skB26 RepID=S6AA46_9PROT
PLM3_127_b2_sep16_scaffold_1228_19
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14885..15238)
DNA (354bp) protein (118aa)
Transmembrane protein Tax=Sulfuricella denitrificans skB26 RepID=S6AKX4_9PROT
transmembrane protein
Tax=CG_Rhodocyc_01
PLM3_127_b2_sep16_scaffold_1228_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15250..16053)
DNA (804bp) protein (268aa)
signal peptidase I (EC:3.4.21.89)
Signal peptidase I Tax=Nitrosospira sp. APG3 RepID=M5DIU1_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1228_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16089..17120)
DNA (1032bp) protein (344aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071, ECO:0000313|EMBL:KIO49233.1}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Elongation factor 4 Tax=Nitrosospira sp. APG3 RepID=M5DIH0_9PROT
GTP-binding protein LepA
PLM3_127_b2_sep16_scaffold_1228_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17060..17791)
DNA (732bp) protein (244aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071, ECO:0000313|EMBL:KIO49233.1}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Elongation factor 4 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=LEPA_NITMU
GTP-binding protein LepA
PLM3_127_b2_sep16_scaffold_1228_23
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18465..19850)
DNA (1386bp) protein (462aa)
protease Do (EC:3.4.21.107)
peptidase Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00035DFEEC
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1228_24
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19899..20882)
DNA (984bp) protein (328aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2EH89_9BACT
sigma E regulatory protein, MucB/RseB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_1228_25
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20885..21394)
DNA (510bp) protein (170aa)
Sigma factor RpoE negative regulatory protein RseA Tax=Nitrosospira sp. APG3 RepID=M5DIT8_9PROT
anti sigma-E protein, RseA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1228_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21397..21996)
DNA (600bp) protein (200aa)
RNA polymerase sigma factor Tax=Sulfuricella denitrificans skB26 RepID=S6AGS4_9PROT
RNA polymerase sigma factor RpoE
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1228_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22221..23795
DNA (1575bp) protein (525aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049, ECO:0000313|EMBL:KIO49186.1}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049, ECO:0000313|EMBL:KIO49186.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase Tax=Nitrosospira sp. APG3 RepID=M5DGK4_9PROT
PLM3_127_b2_sep16_scaffold_1228_28
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23781..24227)
DNA (447bp) protein (149aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AKV5_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Displaying items 1-30 of 48 in total

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