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PLM3_127_b2_sep16_scaffold_1268

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1268_1
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..337
DNA (336bp) protein (112aa)
translation initiation factor IF-3 Tax=Herbaspirillum seropedicae RepID=UPI00036E21FA
translation initiation factor IF-3
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_1268_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


502..699
DNA (198bp) protein (66aa)
50S ribosomal protein L35 Tax=Thiobacillus RepID=RL35_THIDA
50S ribosomal protein L35
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
PLM3_127_b2_sep16_scaffold_1268_3
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


711..1070
DNA (360bp) protein (120aa)
50S ribosomal protein L20 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GLF9_NITSI
50S ribosomal protein L20
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_1268_4
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1137..2135
DNA (999bp) protein (333aa)
Phenylalanyl-tRNA synthetase alpha chain (EC:6.1.1.20)
phenylalanyl-tRNA synthetase Tax=Leeia oryzae RepID=UPI000372186A
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_1268_5
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2237..4651
DNA (2415bp) protein (805aa)
Phenylalanyl-tRNA synthetase subunit beta Tax=Pandoraea RepID=V5UAU5_9BURK
phenylalanyl-tRNA synthetase subunit beta
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
PLM3_127_b2_sep16_scaffold_1268_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4661..4981
DNA (321bp) protein (107aa)
Integration host factor subunit alpha Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHY3_AZOSU
integration host factor subunit alpha
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1268_7
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4947..5318
DNA (372bp) protein (124aa)
transcriptional regulator Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00038032DB
MerR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1268_trna_1
unknown

Not on your lists

5362..5435
DNA (74bp)
transferRNA Pro
PLM3_127_b2_sep16_scaffold_1268_8
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5568..6323
DNA (756bp) protein (252aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
5'-nucleotidase SurE Tax=Sulfuricella denitrificans skB26 RepID=S6AG50_9PROT
surE; stationary phase survival protein SurE
PLM3_127_b2_sep16_scaffold_1268_9
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6355..7014
DNA (660bp) protein (220aa)
Protein-L-isoaspartate O-methyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6B2P9_9PROT
pcm; protein-l-isoaspartate o-methyltransferase
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_1268_10
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7053..8126
DNA (1074bp) protein (358aa)
Peptidase M23 Tax=Methylovorus sp. (strain MP688) RepID=E4QLW0_METS6
peptidase m23
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_1268_11
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8123..9046
DNA (924bp) protein (308aa)
RNA polymerase sigma factor RpoS Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1BVK1_9NEIS
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans EGD-HP2.;"
rpoS; RNA polymerase sigma factor RpoS
PLM3_127_b2_sep16_scaffold_1268_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9086..11038)
DNA (1953bp) protein (651aa)
Transglutaminase domain protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CUR4_SIDLE
transglutaminase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1268_13
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11040..12002)
DNA (963bp) protein (321aa)
Uncharacterized protein Tax=Thauera sp. 63 RepID=N6Y6P2_9RHOO
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1268_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12254..13171)
DNA (918bp) protein (306aa)
ATPase associated with various cellular activities AAA_3 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CUR2_SIDLE
ATPase AAA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1268_15
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13267..13851)
DNA (585bp) protein (195aa)
CoA-binding domain-containing protein Tax=Sulfuricella denitrificans skB26 RepID=S6AAF2_9PROT
CoA-binding domain-containing protein
CoA-binding domain-containing protein {ECO:0000313|EMBL:BAN35755.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_1268_16
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14020..14898
DNA (879bp) protein (293aa)
Histone deacetylase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CS40_SIDLE
Histone deacetylase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_1268_17
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14962..15264)
DNA (303bp) protein (101aa)
Membrane protein Tax=Nitrosospira sp. APG3 RepID=M5DKN6_9PROT
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_1268_18
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15450..16667
DNA (1218bp) protein (406aa)
Aminotransferase Tax=Bordetella RepID=V9ARB8_BORPT
aminotransferase
Aminotransferase {ECO:0000313|EMBL:ETH91544.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis STO1-CHOC-0019.;"
PLM3_127_b2_sep16_scaffold_1268_19
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16772..17227
DNA (456bp) protein (152aa)
hypothetical protein Tax=Uliginosibacterium gangwonense RepID=UPI00038289BF
GCN5-like N-acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1268_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17224..18540
DNA (1317bp) protein (439aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase Tax=Nitrosospira sp. APG3 RepID=M5DJ63_9PROT
PLM3_127_b2_sep16_scaffold_1268_21
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18740..18955
DNA (216bp) protein (72aa)
Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
thrC; threonine synthase (EC:4.2.3.1)
Threonine synthase ThrC Tax=Methyloglobulus morosus KoM1 RepID=V5C383_9GAMM
Displaying 22 items

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