ggKbase home page

PLM3_127_b2_sep16_scaffold_1615

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1615_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1..3075
DNA (3075bp) protein (1025aa)
adenylate/guanylate cyclase bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate/guanylate cyclase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_1615_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3096..3824)
DNA (729bp) protein (243aa)
Uncharacterized protein Tax=Bradyrhizobium sp. ORS 285 RepID=H0S0R1_9BRAD
putative CoA transferase subunit B
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_1615_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3821..4672)
DNA (852bp) protein (284aa)
Possible glutaconate CoA-transferase, subunit A Tax=alpha proteobacterium BAL199 RepID=A8TV53_9PROT
glutaconate CoA-transferase, subunit A
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_1615_4
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4785..5339)
DNA (555bp) protein (185aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
PLM3_127_b2_sep16_scaffold_1615_5
Idiomarina sp. A28L, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5509..5904
DNA (396bp) protein (132aa)
Putative uncharacterized protein Tax=Idiomarina sp. A28L RepID=F7S0N2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGN74298.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina sp. A28L.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1615_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5922..7958)
DNA (2037bp) protein (679aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hppA; pyrophosphatase (EC:3.6.1.1)
pyrophosphatase Tax=Dyella japonica RepID=UPI0002D69F89
PLM3_127_b2_sep16_scaffold_1615_7
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8141..9400)
DNA (1260bp) protein (420aa)
Phosphofructokinase Tax=Sulfuricella denitrificans skB26 RepID=S6ALW9_9PROT
phosphofructokinase
Tax=CG_Rhodocyc_01
PLM3_127_b2_sep16_scaffold_1615_8
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9604..10257)
DNA (654bp) protein (218aa)
adk_[H]; Adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
Adenylate kinase Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E1Y2_THIND
PLM3_127_b2_sep16_scaffold_1615_9
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10350..11117)
DNA (768bp) protein (256aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6B569_9PROT
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1615_10
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11198..11377)
DNA (180bp) protein (60aa)
UPF0434 protein SCD_n01892 Tax=Sulfuricella denitrificans skB26 RepID=S6ACM5_9PROT
hypothetical protein
Tax=CG_Beta_01
PLM3_127_b2_sep16_scaffold_1615_11
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11367..12362)
DNA (996bp) protein (332aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Tetraacyldisaccharide 4'-kinase Tax=Sulfuricella denitrificans skB26 RepID=S6ALX4_9PROT
tetraacyldisaccharide 4'-kinase
PLM3_127_b2_sep16_scaffold_1615_12
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12420..12836)
DNA (417bp) protein (139aa)
hypothetical protein Tax=Chitiniphilus shinanonensis RepID=UPI0003715989
biopolymer transport protein ExbD/TolR
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM3_127_b2_sep16_scaffold_1615_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12857..13468)
DNA (612bp) protein (204aa)
MotA/TolQ/ExbB proton channel Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA89_NITMU
Flagellar motor protein MotA {ECO:0000313|EMBL:KIO49838.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
MotA/TolQ/ExbB proton channel
PLM3_127_b2_sep16_scaffold_1615_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13926..15266
DNA (1341bp) protein (447aa)
Exodeoxyribonuclease 7 large subunit Tax=Sulfuricella denitrificans skB26 RepID=S6B574_9PROT
exodeoxyribonuclease VII large subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_1615_15
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15397..15879
DNA (483bp) protein (161aa)
hypothetical protein bin=bin5_DeltaP species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_1615_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16184..16378)
DNA (195bp) protein (65aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6AAE3_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Displaying 16 items

View Taxonomy