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PLM3_127_b2_sep16_scaffold_1765

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1765_1
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..251)
DNA (249bp) protein (83aa)
TolC family type I secretion outer membrane protein Tax=Sulfuricella denitrificans skB26 RepID=S6B8S1_9PROT
TolC family type I secretion outer membrane protein
TolC family type I secretion outer membrane protein {ECO:0000313|EMBL:BAN36717.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_1765_2
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(248..955)
DNA (708bp) protein (236aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002E19934
TetR family transcriptional regulator {ECO:0000313|EMBL:KIF81779.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
TetR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_1765_3
RLO_Pseudomonas_59_9, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1139..2518
DNA (1380bp) protein (460aa)
MEMO1 family protein Tbd_1586 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SII9_THIDA
hypothetical protein
Tax=RifCSPlowO2_12_Pseudomonas_59_9_curated
PLM3_127_b2_sep16_scaffold_1765_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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2509..3603
DNA (1095bp) protein (365aa)
Radical SAM Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q222A3_RHOFD
radical SAM family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1765_5
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3817..4437)
DNA (621bp) protein (207aa)
Phosphoribosyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6B4R4_9PROT
phosphoribosyltransferase
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
PLM3_127_b2_sep16_scaffold_1765_6
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4449..5348)
DNA (900bp) protein (300aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase Tax=Methylomicrobium buryatense RepID=UPI000346AAB1
folD; methylene-tetrahydrofolate dehydrogenase/cyclohydrolase
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
PLM3_127_b2_sep16_scaffold_1765_7

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comp(5573..7690)
DNA (2118bp) protein (706aa)
Predicted oxidoreductase RSc2859 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMZ9_9BACT
Predicted oxidoreductase RSc2859 {ECO:0000313|EMBL:AAY89998.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium BAC13K9BAC.;"
molybdopterin oxidoreductase
PLM3_127_b2_sep16_scaffold_1765_8
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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7787..9877
DNA (2091bp) protein (697aa)
hypothetical protein Tax=Spirosoma panaciterrae RepID=UPI00035C1BC7
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3_127_b2_sep16_scaffold_1765_9
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

10300..14247
DNA (3948bp) protein (1316aa)
Uncharacterized protein Tax=Agarivorans albus MKT 106 RepID=R9PHQ4_AGAAL
Uncharacterized protein {ECO:0000313|EMBL:KGM43091.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1765_10
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(14267..15142)
DNA (876bp) protein (292aa)
Putative uncharacterized protein Tax=sulfur-oxidizing symbionts RepID=G2DBI9_9GAMM
Peptidase M48 Ste24p {ECO:0000313|EMBL:KGM44233.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_1765_11
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15319..15552)
DNA (234bp) protein (78aa)
HNH endonuclease bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
restriction endonuclease
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_1765_12
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(16259..18049)
DNA (1791bp) protein (597aa)
4Fe-4S ferredoxin Tax=Desulfospira joergensenii RepID=UPI0003B424F8
glutamate synthase beta chain-related oxidoreductase
Tax=CG_Arma_01
PLM3_127_b2_sep16_scaffold_1765_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18163..19839)
DNA (1677bp) protein (559aa)
formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase Tax=Methylibium petroleiphilum (strain PM1) RepID=FTHS_METPP
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1765_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19889..20377)
DNA (489bp) protein (163aa)
Uncharacterized protein Tax=Afipia broomeae ATCC 49717 RepID=K8PHM9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41056.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative signal peptide protein
PLM3_127_b2_sep16_scaffold_1765_15
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(20410..21651)
DNA (1242bp) protein (414aa)
M20 family peptidase Tax=Azospirillum amazonense Y2 RepID=G1Y0J2_9PROT
N-acyl-L-amino acid amidohydrolase {ECO:0000313|EMBL:KER10223.1}; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
amidohydrolase
PLM3_127_b2_sep16_scaffold_1765_16
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21648..22481)
DNA (834bp) protein (278aa)
Uncharacterized protein Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SV65_META2
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_1765_17
unknown

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comp(22524..22895)
DNA (372bp) protein (124aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1765_18
unknown

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23254..23409
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1765_19
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23453..24388
DNA (936bp) protein (312aa)
Patatin Tax=Thauera aminoaromatica S2 RepID=N6XYX9_9RHOO
Esterase {ECO:0000313|EMBL:KIF80852.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
patatin
Displaying 19 items

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