ggKbase home page

PLM3_127_b2_sep16_scaffold_74

Search features with annotation key words

Displaying items 61-90 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_74_61
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64124..64789
DNA (666bp) protein (222aa)
Putative uncharacterized protein bin=GWF2_Syntrophobacterales_56_9 species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_74_62
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64786..65739
DNA (954bp) protein (318aa)
Putative uncharacterized protein Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QNV7_CHLP8
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_74_63
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65878..67983)
DNA (2106bp) protein (702aa)
CoA-binding protein Tax=Rhodopseudomonas sp. B29 RepID=UPI0003495157
CoA-binding protein {ECO:0000313|EMBL:KJB92463.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
CoA-binding domain-containing protein
PLM3_127_b2_sep16_scaffold_74_64
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67980..68342)
DNA (363bp) protein (121aa)
General L-amino acid transport system permease Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I9T4_9BRAD
DNA-binding protein {ECO:0000313|EMBL:KJB92464.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_74_65
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68339..69475)
DNA (1137bp) protein (379aa)
Acetyl-CoA acetyltransferase Tax=Bradyrhizobium sp. YR681 RepID=J2W754_9BRAD
Thiolase {ECO:0000313|EMBL:KJB92465.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
thiolase
PLM3_127_b2_sep16_scaffold_74_66
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69650..70417)
DNA (768bp) protein (256aa)
IclR family transcriptional regulator Tax=Acidovorax sp. NO-1 RepID=H0BWI9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KJB92466.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
IclR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_74_67
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70433..71482)
DNA (1050bp) protein (350aa)
Uncharacterized protein Tax=Methylobacterium sp. (strain 4-46) RepID=B0ULB4_METS4
Cyclase {ECO:0000313|EMBL:KJB92467.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_74_68
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71948..72907
DNA (960bp) protein (320aa)
Gluconolactonase {ECO:0000313|EMBL:CDX33079.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Bll1368 protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
PLM3_127_b2_sep16_scaffold_74_69
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73344..73664)
DNA (321bp) protein (107aa)
hypothetical protein Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00036A7BF4
helix-turn-helix domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_74_70
Selaginella moellendorffii, Selaginella, Selaginellales, Lycopodiidae, Streptophyta, Viridiplantae

Not on your lists

74703..75560
DNA (858bp) protein (286aa)
Putative uncharacterized protein Tax=Selaginella moellendorffii RepID=D8QPJ9_SELML
Putative uncharacterized protein {ECO:0000313|EMBL:EFJ38293.1}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella.;" source="Selaginella moellendorffii (Spikemoss).;"
Late embryogenesis abundant protein 2
PLM3_127_b2_sep16_scaffold_74_71
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

75573..77027
DNA (1455bp) protein (485aa)
Amidase Tax=Oceanibaculum indicum P24 RepID=K2II91_9PROT
amidase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_74_72
unknown

Not on your lists

comp(77275..77541)
DNA (267bp) protein (89aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_74_73
unknown

Not on your lists

comp(77755..78219)
DNA (465bp) protein (155aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_74_74
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79052..79915)
DNA (864bp) protein (288aa)
Conserved hypothethical protein, AttM-like protein Tax=Ralstonia solanacearum CMR15 RepID=D8NH20_RALSL
conserved hypothethical protein, AttM-like protein
Conserved hypothethical protein, AttM-like protein {ECO:0000313|EMBL:CBJ40194.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
PLM3_127_b2_sep16_scaffold_74_75
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80009..80341)
DNA (333bp) protein (111aa)
Sulfur oxidation protein SoxZ Tax=Methylosinus trichosporium OB3b RepID=D5QVP4_METTR
sulfur oxidation protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_74_76
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80341..80832)
DNA (492bp) protein (164aa)
Putative sulfur oxidation protein soxY Tax=Bradyrhizobium sp. STM 3843 RepID=H0TE12_9BRAD
Putative sulfur oxidation protein soxY {ECO:0000313|EMBL:CCE04700.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_74_77
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80929..83088)
DNA (2160bp) protein (720aa)
Isoquinoline 1-oxidoreductase, beta subunit Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GST6_9BRAD
putative aldehyde dehydrogenase protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_74_78
bacterium YEK0313, Bacteria

Not on your lists

comp(83101..83550)
DNA (450bp) protein (150aa)
hypothetical protein Tax=Limnohabitans sp. Rim47 RepID=UPI0002FEB801
Isoquinoline 1-oxidoreductase subunit alpha {ECO:0000313|EMBL:CEJ14988.1}; species="Bacteria.;" source="bacterium YEK0313.;"
(2Fe-2S)-binding protein
PLM3_127_b2_sep16_scaffold_74_79
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

83856..84632
DNA (777bp) protein (259aa)
Phosphonate-transporting ATPase {ECO:0000313|EMBL:EGV17064.1}; EC=3.6.3.28 {ECO:0000313|EMBL:EGV17064.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
Phosphonate-transporting ATPase Tax=Thiocapsa marina 5811 RepID=F9UF27_9GAMM
ABC transporter
PLM3_127_b2_sep16_scaffold_74_80
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84643..85914
DNA (1272bp) protein (424aa)
ABC-type transport system, involved in lipoprotein release, permease component Tax=Thioflavicoccus mobilis 8321 RepID=L0H0R5_9GAMM
lipoprotein release ABC transporter permease
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:AGA91230.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
PLM3_127_b2_sep16_scaffold_74_81
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

85933..86598
DNA (666bp) protein (222aa)
hypothetical protein Tax=Synechococcus sp. PCC 7336 RepID=UPI0003491D6B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE55651.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
PLM3_127_b2_sep16_scaffold_74_82
unknown

Not on your lists

comp(86644..87132)
DNA (489bp) protein (163aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_74_83
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87746..88699
DNA (954bp) protein (318aa)
immunogenic protein precursor Tax=Bradyrhizobium japonicum RepID=UPI00036B01EC
immunogenic protein precursor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_74_84
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88808..89443
DNA (636bp) protein (212aa)
Methylase involved in ubiquinone/menaquinone biosynthesis bin=GWD2_Deltaproteobacteria_55_8 species=Burkholderia sp. BT03 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
thiopurine S-methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_127_b2_sep16_scaffold_74_85
unknown

Not on your lists

89631..90161
DNA (531bp) protein (177aa)
id=1938451 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
PLM3_127_b2_sep16_scaffold_74_86
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90682..91287
DNA (606bp) protein (202aa)
Peptidase, S54 family Tax=Lautropia mirabilis ATCC 51599 RepID=E7RVS1_9BURK
integral membrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_74_87
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

91453..92127
DNA (675bp) protein (225aa)
fkpA; peptidylprolyl isomerase, FKBp-type (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915, ECO:0000313|EMBL:CBK43286.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Peptidyl-prolyl cis-trans isomerase Tax=Candidatus Nitrospira defluvii RepID=D8PJ49_9BACT
PLM3_127_b2_sep16_scaffold_74_88
unknown

Not on your lists

comp(92268..92543)
DNA (276bp) protein (92aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_74_89
unknown

Not on your lists

comp(92620..92943)
DNA (324bp) protein (108aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_74_90
unknown

Not on your lists

comp(92967..93323)
DNA (357bp) protein (119aa)

This feature has no annotations

Displaying items 61-90 of 143 in total

View Taxonomy