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PLM3_127_b2_sep16_scaffold_114

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Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_114_1
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..107)
DNA (105bp) protein (35aa)
Mg chelatase-related protein Tax=Herbaspirillum sp. CF444 RepID=J2TQR8_9BURK
Mg chelatase subunit ChlI
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
PLM3_127_b2_sep16_scaffold_114_2
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(372..611)
DNA (240bp) protein (80aa)
hypothetical protein Tax=Chitiniphilus shinanonensis RepID=UPI0003702561
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAO28337.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
PLM3_127_b2_sep16_scaffold_114_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

946..1284
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 Tax=Azoarcus toluclasticus RepID=UPI00037275C4
nitrogen regulatory protein PII
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_114_4
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1295..2755
DNA (1461bp) protein (487aa)
Ammonium transporter Tax=Methylotenera sp. (strain 301) RepID=D7DNJ6_METS0
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
PLM3_127_b2_sep16_scaffold_114_5
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2831..4279
DNA (1449bp) protein (483aa)
ABC transporter ATP-binding protein Tax=Sulfuricella denitrificans skB26 RepID=S6AHF9_9PROT
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAN33929.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_114_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4293..5288
DNA (996bp) protein (332aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162, ECO:0000313|EMBL:KIO48034.1}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase Tax=Nitrosospira sp. APG3 RepID=M5DGW7_9PROT
PLM3_127_b2_sep16_scaffold_114_7
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5473..5889
DNA (417bp) protein (139aa)
PTS system fructose subfamily IIA component Tax=Methylovorus RepID=C6X8H7_METSD
manX; PTS system fructose subfamily transporter subunit IIA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_114_8
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5900..6139
DNA (240bp) protein (80aa)
Phosphocarrier protein HPr Tax=pseudomallei group RepID=A1UZY4_BURMS
ptsH; phosphocarrier protein HPr
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:KDB08614.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
PLM3_127_b2_sep16_scaffold_114_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6220..7944
DNA (1725bp) protein (575aa)
Phosphoenolpyruvate-protein phosphotransferase Tax=Sulfuricella denitrificans skB26 RepID=S6AHG2_9PROT
phosphoenolpyruvate-protein phosphotransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_114_10
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7953..8342
DNA (390bp) protein (130aa)
Putative uncharacterized protein Tax=Beggiatoa sp. PS RepID=A7BVR6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAP57862.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingrica.;"
PLM3_127_b2_sep16_scaffold_114_11
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8354..9415
DNA (1062bp) protein (354aa)
DNA polymerase III subunit delta Tax=Sulfuricella denitrificans skB26 RepID=S6AHE1_9PROT
DNA polymerase III subunit delta
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_114_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9421..10677
DNA (1257bp) protein (419aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000255|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000255|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GSA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Gamma-glutamyl phosphate reductase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=PROA_NITMU
PLM3_127_b2_sep16_scaffold_114_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10986..12746
DNA (1761bp) protein (587aa)
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex Tax=Nitrosospira sp. APG3 RepID=M5DGU6_9PROT
dihydrolipoamide dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_114_14
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12970..13809
DNA (840bp) protein (280aa)
NADH pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016168}; EC=3.6.1.22 {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016202};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
NADH pyrophosphatase Tax=Azoarcus sp. KH32C RepID=H0PZE5_9RHOO
npy1; NTP pyrophosphohydrolase
PLM3_127_b2_sep16_scaffold_114_15
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13844..14464
DNA (621bp) protein (207aa)
Glutathione S-transferase-like protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZG2_RUBXD
glutathione S-transferase-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_114_16
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14479..14943)
DNA (465bp) protein (155aa)
MarR family regulatory helix-turn-helix protein 6 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T5E8_ALCXX
MarR family regulatory helix-turn-helix protein 6 {ECO:0000313|EMBL:EGP44458.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
Transcriptional regulator, MarR family
PLM3_127_b2_sep16_scaffold_114_17
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15052..15402
DNA (351bp) protein (117aa)
Uncharacterized protein Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KRD7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPC03063.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_114_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15705..16874)
DNA (1170bp) protein (390aa)
L-carnitine dehydratase/bile acid-inducible protein F Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z8I4_9RHOO
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_114_19
beta proteobacterium CB, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16969..17166)
DNA (198bp) protein (66aa)
Uncharacterized protein Tax=beta proteobacterium CB RepID=M1T6L1_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG34547.1}; species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="beta proteobacterium CB.;"
PLM3_127_b2_sep16_scaffold_114_20
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17163..18080)
DNA (918bp) protein (306aa)
Hydroxymethylglutaryl-CoA lyase Tax=Oceanibaculum indicum P24 RepID=K2JNQ1_9PROT
hmgL1; hydroxymethylglutaryl-CoA lyase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_114_21
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18077..20092)
DNA (2016bp) protein (672aa)
3-methylcrotonyl-CoA carboxylase, biotin-containing alpha subunit Tax=Geobacter metallireducens RepID=Q39QG9_GEOMG
mccA; 3-methylcrotonyl-CoA carboxylase, biotin-containing subunit alpha
3-methylcrotonyl-CoA carboxylase, biotin-containing alpha subunit {ECO:0000313|EMBL:ABB33505.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM3_127_b2_sep16_scaffold_114_22
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20269..21060)
DNA (792bp) protein (264aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EWY39698.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EWY39698.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Enoyl-CoA hydratase/isomerase Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39QH0_GEOMG
enoyl-CoA hydratase/isomerase
PLM3_127_b2_sep16_scaffold_114_23
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21087..22265)
DNA (1179bp) protein (393aa)
Candidate Long chain acyl-CoA dehydrogenase Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWX9_RAMTT
Long chain acyl-CoA dehydrogenase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
PLM3_127_b2_sep16_scaffold_114_24
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22269..23876)
DNA (1608bp) protein (536aa)
Acetyl/propionyl-CoA carboxylase, beta chain Tax=Azospirillum brasilense Sp245 RepID=G8ATT5_AZOBR
methylcrotonoyl-CoA carboxylase
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:AIB15080.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM3_127_b2_sep16_scaffold_114_25
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23873..24517)
DNA (645bp) protein (215aa)
Glutathione S-transferase family protein Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IY53_POLGS
glutathione S-transferase
Glutathione S-transferase family protein {ECO:0000313|EMBL:ADZ71665.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
PLM3_127_b2_sep16_scaffold_114_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24548..25150)
DNA (603bp) protein (201aa)
2-hydroxychromene-2-carboxylate isomerase Tax=Caenispirillum salinarum AK4 RepID=K9H3U6_9PROT
2-hydroxychromene-2-carboxylate isomerase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_114_27
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25361..26272)
DNA (912bp) protein (304aa)
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase Tax=Herbaspirillum sp. CF444 RepID=J2U938_9BURK
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:EJL87732.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_114_28
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26426..27610)
DNA (1185bp) protein (395aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase Tax=Pandoraea RepID=V5UFX9_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_114_29
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27641..28825)
DNA (1185bp) protein (395aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CBS88355.1}; EC=1.3.99.- {ECO:0000313|EMBL:CBS88355.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Acyl-CoA dehydrogenase Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z9Y5_AZOL4
acyl-CoA dehydrogenase
PLM3_127_b2_sep16_scaffold_114_30
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28822..29325)
DNA (504bp) protein (168aa)
Uncharacterized protein Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJ11_AZOSU
hypothetical protein
Tax=CG_Rhodocyc_01
Displaying items 1-30 of 61 in total

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