ggKbase home page

PLM3_127_b2_sep16_scaffold_137

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_137_1
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..230
DNA (228bp) protein (76aa)
Heavy metal efflux pump, CzcA family protein Tax=Enterobacter radicincitans DSM 16656 RepID=J1YK16_9ENTR
Cobalt-zinc-cadmium resistance efflux protein CzcA {ECO:0000313|EMBL:KIH85949.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
CzcA family heavy metal efflux protein
PLM3_127_b2_sep16_scaffold_137_2
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

418..696
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1YHR4_9BACT
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_62_13__curated
PLM3_127_b2_sep16_scaffold_137_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

803..1513
DNA (711bp) protein (237aa)
Cytochrome c2 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QST4_9BRAD
cyc; cytochrome c iso-1/iso-2 domain protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_137_4
unknown

Not on your lists

1557..1754
DNA (198bp) protein (66aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_137_5
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1708..3195)
DNA (1488bp) protein (496aa)
czcS; sensor histine kinase of the two component regulatory system, heavy metal resistance operon czccba activation (EC:2.7.13.3)
heavy metal sensor signal transduction histidine kinase Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00036981C6
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_137_6
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3188..3868)
DNA (681bp) protein (227aa)
Winged helix family two component heavy metal response transcriptional regulator Tax=Thauera aminoaromatica S2 RepID=N6YC10_9RHOO
winged helix family two component heavy metal response transcriptional regulator
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_137_7
unknown

Not on your lists

4049..4201
DNA (153bp) protein (51aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_137_8
unknown

Not on your lists

4415..5638
DNA (1224bp) protein (408aa)
porin
PLM3_127_b2_sep16_scaffold_137_9
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5831..7345
DNA (1515bp) protein (505aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Thiorhodococcus drewsii AZ1 RepID=G2DWJ1_9GAMM
Two component, sigma54 specific,transcriptional regulator, Fis family {ECO:0000313|EMBL:CDI00932.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
nitrogen assimilation regulatory protein NtrX
PLM3_127_b2_sep16_scaffold_137_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7657..9555)
DNA (1899bp) protein (633aa)
Serine/threonine protein kinase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLD6_SIDLE
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_137_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9566..11326)
DNA (1761bp) protein (587aa)
Integral membrane sensor signal transduction histidine kinase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLD5_SIDLE
integral membrane sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_137_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11612..13138)
DNA (1527bp) protein (509aa)
Ppx/GppA phosphatase (EC:3.6.1.40)
Ppx/GppA phosphatase Tax=Sulfuricella denitrificans skB26 RepID=S6AB25_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_137_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13360..14070)
DNA (711bp) protein (237aa)
Phosphate-specific transport system accessory protein PhoU Tax=Nitrosospira sp. APG3 RepID=M5DG89_9PROT
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phosphate uptake regulator, PhoU
PLM3_127_b2_sep16_scaffold_137_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14138..14797)
DNA (660bp) protein (220aa)
ribose 5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase A Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CP37_SIDLE
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_137_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14922..16433
DNA (1512bp) protein (504aa)
threonine dehydratase (EC:4.3.1.19)
Threonine dehydratase Tax=Sulfuricella denitrificans skB26 RepID=S6B0N7_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_137_16
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16512..18416
DNA (1905bp) protein (635aa)
Lytic transglycosylase catalytic subunit Tax=Sulfuricella denitrificans skB26 RepID=S6A9K0_9PROT
Transglycosylase {ECO:0000313|EMBL:GAO35266.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
lytic transglycosylase catalytic subunit
PLM3_127_b2_sep16_scaffold_137_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18491..19441
DNA (951bp) protein (317aa)
NAD-dependent epimerase/dehydratase Tax=Nitrosospira sp. APG3 RepID=M5DL79_9PROT
NAD-dependent epimerase/dehydratase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_137_18
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19490..20143
DNA (654bp) protein (218aa)
Glutathione S-transferase domain protein bin=GWE1_T_denit_62_9 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glutathione S-transferase
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_137_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20140..21363
DNA (1224bp) protein (408aa)
cca; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase (EC:2.7.7.25 2.7.7.21)
Multifunctional CCA protein Tax=Nitrosospira sp. APG3 RepID=M5DWW0_9PROT
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
PLM3_127_b2_sep16_scaffold_137_20
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21413..22057
DNA (645bp) protein (215aa)
EF hand Tax=Ralstonia RepID=E2SXR3_9RALS
Calcium-binding EF-hand-containing protein
Calcium-binding EF-hand-containing protein {ECO:0000313|EMBL:ACO73220.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
PLM3_127_b2_sep16_scaffold_137_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22106..22303)
DNA (198bp) protein (66aa)
hypothetical protein bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96474.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM3_127_b2_sep16_scaffold_137_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22653..23276
DNA (624bp) protein (208aa)
Putative glutathione S-transferase (EC:2.5.1.18)
Glutathione S-transferase domain protein Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9YYI7_9NEIS
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_137_23
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23297..24583
DNA (1287bp) protein (429aa)
Cyclic nucleotide-binding protein bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
cyclic nucleotide-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_137_24
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24956..25171
DNA (216bp) protein (72aa)
DUF1289 domain containing protein Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D7D7_LARHH
hypothetical protein
DUF1289 domain containing protein {ECO:0000313|EMBL:ACO74377.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
PLM3_127_b2_sep16_scaffold_137_25
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25164..25589)
DNA (426bp) protein (142aa)
UspA domain protein Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AE80_NITEC
UspA domain-containing protein
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_137_26
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25604..26347)
DNA (744bp) protein (248aa)
Integral membrane protein TerC Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y659_NITMU
integral membrane protein TerC
Integral membrane protein TerC {ECO:0000313|EMBL:ABB75762.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
PLM3_127_b2_sep16_scaffold_137_27
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26387..27271)
DNA (885bp) protein (295aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha Tax=Limnobacter sp. MED105 RepID=A6GU70_9BURK
succinyl-CoA synthetase subsunit alpha
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_137_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27274..28443)
DNA (1170bp) protein (390aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
malate--CoA ligase subunit beta Tax=Burkholderia kururiensis RepID=UPI0003497D53
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_137_29
Metarhizium guizhouense, Metarhizium, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

comp(28962..29318)
DNA (357bp) protein (119aa)
Pneumococcal surface protein A Tax=Streptococcus pneumoniae GA49138 RepID=G6KN08_STREE
Uncharacterized protein {ECO:0000313|EMBL:KID82009.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Clavicipitaceae; Metarhizium.;" source="Metarhizium guizhouense ARSEF 977.;"
ftsY; cell division protein
PLM3_127_b2_sep16_scaffold_137_trna_1
unknown

Not on your lists

comp(29402..29474)
DNA (73bp)
transferRNA Thr
Displaying items 1-30 of 62 in total

View Taxonomy