ggKbase home page

PLM3_127_b2_sep16_scaffold_188

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_188_1
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..247)
DNA (246bp) protein (82aa)
Iron-sulfur cluster assembly protein SufD Tax=Nitrosospira sp. APG3 RepID=M5DFJ5_9PROT
FeS assembly protein SufD
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_188_2
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(372..1145)
DNA (774bp) protein (258aa)
FeS assembly ATPase SufC Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XB6_RHOFD
FeS assembly ATPase SufC
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_188_3
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1142..2575)
DNA (1434bp) protein (478aa)
Iron-sulfur cluster assembly protein SufB Tax=Nitrosospira sp. APG3 RepID=M5DFE2_9PROT
cysteine desulfurase activator complex subunit SufB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_188_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2605..2928)
DNA (324bp) protein (108aa)
HesB/YadR/YfhF Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB69_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO50202.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
HesB/YadR/YfhF
PLM3_127_b2_sep16_scaffold_188_5
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2958..4100)
DNA (1143bp) protein (381aa)
Cysteine desulfurase Tax=Nitrosospira sp. APG3 RepID=M5DEX5_9PROT
cysteine desulfurase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_188_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4111..4596)
DNA (486bp) protein (162aa)
Transcriptional regulator, BadM/Rrf2 family Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RMU8_ACCPU
BadM/Rrf2 family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_188_7
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4679..5431)
DNA (753bp) protein (251aa)
serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6AGE2_9PROT
Tax=CG_Beta_01
PLM3_127_b2_sep16_scaffold_188_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5485..6225)
DNA (741bp) protein (247aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
RNA methyltransferase TrmH, group 1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB91_NITMU
RNA methyltransferase TrmH
PLM3_127_b2_sep16_scaffold_188_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6270..7067
DNA (798bp) protein (266aa)
inositol-1(or 4)-monophosphatase (EC:3.1.3.25)
Inositol-1-monophosphatase Tax=Nitrosospira sp. APG3 RepID=M5DNL2_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_188_10
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7302..7775
DNA (474bp) protein (158aa)
uncharacterized protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_188_11
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7756..8298
DNA (543bp) protein (181aa)
Uncharacterized protein Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G8L5_ALIDK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_188_12
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8364..10901
DNA (2538bp) protein (846aa)
DNA mismatch repair protein MutS Tax=Nitrosospira sp. APG3 RepID=M5DFU5_9PROT
DNA mismatch repair protein MutS
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_188_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(10973..11368)
DNA (396bp) protein (132aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Cylindrospermum stagnale genus=Cylindrospermum taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_127_b2_sep16_scaffold_188_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11365..11613)
DNA (249bp) protein (83aa)
hypothetical protein Tax=Synechococcus sp. PCC 7336 RepID=UPI00034BC4AD
AbrB family transcriptional regulator
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_188_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11962..13083)
DNA (1122bp) protein (374aa)
Adenylate/guanylate cyclase bin=GWC2_Methylomirabilis_70_16 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
adenylate/guanylate cyclase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_127_b2_sep16_scaffold_188_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13080..13475)
DNA (396bp) protein (132aa)
Response regulator receiver protein bin=GWF2_Methylomirabilis_70_14 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_188_17
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13460..15010)
DNA (1551bp) protein (517aa)
histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Histidine kinase Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y592_LEPCP
PLM3_127_b2_sep16_scaffold_188_18
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15007..15627)
DNA (621bp) protein (207aa)
UPI0003CFFFEE related cluster Tax=unknown RepID=UPI0003CFFFEE
Uncharacterized protein {ECO:0000313|EMBL:ESZ43578.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
electron transport protein SCO1/SenC
PLM3_127_b2_sep16_scaffold_188_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15624..16691)
DNA (1068bp) protein (356aa)
Putative ABC transporter substrate-binding protein Tax=Rhizobium sp. (strain NGR234) RepID=C3KNN6_RHISN
ABC transporter substrate-binding protein
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:ACP21694.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
PLM3_127_b2_sep16_scaffold_188_20
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16701..17717)
DNA (1017bp) protein (339aa)
Putative ABC transporter substrate-binding protein Tax=Rhizobium sp. (strain NGR234) RepID=C3KNN6_RHISN
ABC transporter substrate-binding protein
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:ACP21694.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
PLM3_127_b2_sep16_scaffold_188_21
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17843..18901)
DNA (1059bp) protein (353aa)
Putative ABC transporter substrate-binding protein Tax=Rhizobium sp. (strain NGR234) RepID=C3KNN6_RHISN
ABC transporter substrate-binding protein
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:ACP21694.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
PLM3_127_b2_sep16_scaffold_188_22
unknown

Not on your lists

comp(18915..19121)
DNA (207bp) protein (69aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_188_23
unknown

Not on your lists

comp(19189..19368)
DNA (180bp) protein (60aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_188_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19384..19677
DNA (294bp) protein (98aa)
Putative uncharacterized protein Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SHT7_GALCS
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_188_25
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19688..20062
DNA (375bp) protein (125aa)
Putative transcription regulator with HTH domain Tax=Thauera sp. (strain MZ1T) RepID=C4KD79_THASP
putative transcription regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_188_26
unknown

Not on your lists

comp(20302..20412)
DNA (111bp) protein (37aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_188_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20501..21529)
DNA (1029bp) protein (343aa)
Membrane-bound lytic murein transglycosylase B Tax=Nitrosospira sp. APG3 RepID=M5DUK5_9PROT
lytic murein transglycosylase B
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_188_28
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21534..22742)
DNA (1209bp) protein (403aa)
Uncharacterized protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9R2_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_188_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22739..23200)
DNA (462bp) protein (154aa)
Cytochrome c heme lyase subunit CcmL Tax=Nitrosospira sp. APG3 RepID=M5DI83_9PROT
cytochrome C biogenesis protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_188_30
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23206..23730)
DNA (525bp) protein (175aa)
Periplasmic protein thiol Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9R0_NITMU
periplasmic protein thiol
Tax=GWA2_Gallionellales_60_18_curated
Displaying items 1-30 of 60 in total

View Taxonomy