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PLM3_127_b2_sep16_scaffold_327

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_327_1
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..716)
DNA (714bp) protein (238aa)
TolC family type I secretion outer membrane protein Tax=Sulfuricella denitrificans skB26 RepID=S6B8S1_9PROT
TolC family type I secretion outer membrane protein
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
PLM3_127_b2_sep16_scaffold_327_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(937..1590)
DNA (654bp) protein (218aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6ADT8_9PROT
protein-L-isoaspartate(D-aspartate) O-methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_327_3
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1843..3714
DNA (1872bp) protein (624aa)
Phosphomethylpyrimidine synthase Tax=Nitrosospira sp. APG3 RepID=M5DNV3_9PROT
thiamine biosynthesis protein ThiC
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_327_4
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3740..4567
DNA (828bp) protein (276aa)
Putative uncharacterized protein Tax=Beggiatoa sp. PS RepID=A7BQ28_9GAMM
alpha/beta fold family hydrolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_327_5
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4604..5428
DNA (825bp) protein (275aa)
undecaprenol kinase (EC:3.6.1.27)
Undecaprenyl-diphosphatase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQC4_SIDLE
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_327_6
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5615..6067)
DNA (453bp) protein (151aa)
Rhodanese-related sulfurtransferase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJM4_AZOSU
Rhodanese-related sulfurtransferase
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:AEV25449.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
PLM3_127_b2_sep16_scaffold_327_7
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6373..7782
DNA (1410bp) protein (470aa)
Glutamine synthetase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6P1_NITMU
glutamine synthetase, type I
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_327_8
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7959..8432
DNA (474bp) protein (158aa)
Conserved hypothetical secreted protein Tax=Azoarcus sp. (strain BH72) RepID=A1K3E9_AZOSB
hypothetical protein
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
PLM3_127_b2_sep16_scaffold_327_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8563..9606
DNA (1044bp) protein (348aa)
ntrB; nitrogen regulation protein NR(II) (EC:2.7.13.1)
Nitrogen regulation protein NR(II) Tax=Azoarcus sp. (strain BH72) RepID=A1K3E8_AZOSB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_327_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9635..11119
DNA (1485bp) protein (495aa)
Nitrogen metabolism transcriptional regulator NtrC Tax=Sulfuricella denitrificans skB26 RepID=S6AE79_9PROT
nitrogen metabolism transcriptional regulator NtrC
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_327_11
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11379..12143)
DNA (765bp) protein (255aa)
Exodeoxyribonuclease III Xth Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQD2_SIDLE
exodeoxyribonuclease III Xth
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_327_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12150..12740)
DNA (591bp) protein (197aa)
Glutaredoxin-like protein Tax=Sulfuricella denitrificans skB26 RepID=S6AE82_9PROT
glutaredoxin-like protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_327_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12769..14799)
DNA (2031bp) protein (677aa)
oligopeptidase A (EC:3.4.24.70)
oligopeptidase A Tax=Thiobacillus thioparus RepID=UPI00037060C3
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_327_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14890..16164)
DNA (1275bp) protein (425aa)
pyrC; dihydroorotase, multifunctional complex type (EC:3.5.2.3)
Dihydroorotase Tax=Sulfuricella denitrificans skB26 RepID=S6AAT7_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_327_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16178..17131)
DNA (954bp) protein (318aa)
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase Tax=Nitrosospira sp. APG3 RepID=M5DX13_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_327_16
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17131..17643)
DNA (513bp) protein (171aa)
bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein PyrR Tax=Nitrosospira sp. APG3 RepID=M5DLA2_9PROT
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_327_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17630..18100)
DNA (471bp) protein (157aa)
Putative Holliday junction resolvase Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=RUVX_METFK
Holliday junction resolvase-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_327_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18134..18700)
DNA (567bp) protein (189aa)
UPF0301 protein Dsui_0593 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFY2_AZOSU
putative transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_327_19
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18951..19451
DNA (501bp) protein (167aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Sulfuricella denitrificans skB26 RepID=S6ABF5_9PROT
RNA polymerase, sigma-24 subunit, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:BAN34658.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_327_20
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19448..19837
DNA (390bp) protein (130aa)
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_327_21
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19867..20286
DNA (420bp) protein (140aa)
Uncharacterized protein Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QM13_AZOSU
hypothetical protein
Tax=CG_Rhodocyc_01
PLM3_127_b2_sep16_scaffold_327_22
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20349..20750
DNA (402bp) protein (134aa)
RDD protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YA64_NITMU
RDD
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_327_23
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20874..21950)
DNA (1077bp) protein (359aa)
Permease YjgP/YjgQ Tax=Sulfuricella denitrificans skB26 RepID=S6AJE8_9PROT
permease YjgP/YjgQ
Tax=CG_Beta_01
PLM3_127_b2_sep16_scaffold_327_24
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21947..23035)
DNA (1089bp) protein (363aa)
Permease YjgP/YjgQ family protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CMG3_SIDLE
permease YjgP/YjgQ family protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_327_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23115..24605
DNA (1491bp) protein (497aa)
leucyl aminopeptidase (EC:3.4.11.1)
multifunctional aminopeptidase A Tax=Methyloversatilis universalis RepID=UPI000362F07E
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_327_26
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24890..25318
DNA (429bp) protein (143aa)
DNA polymerase III chi subunit, HolC Tax=Sulfuricella denitrificans skB26 RepID=S6AFI5_9PROT
DNA polymerase III subunit chi {ECO:0000313|EMBL:GAO35062.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
DNA polymerase III chi subunit, HolC
PLM3_127_b2_sep16_scaffold_327_27
unknown

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25318..25773
DNA (456bp) protein (152aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_327_28
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25873..27585
DNA (1713bp) protein (571aa)
valyl-tRNA synthase Tax=Pandoraea sp. B-6 RepID=UPI000345BD29
valine--tRNA ligase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_327_29
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27593..28678
DNA (1086bp) protein (362aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CF2.;"
Valine--tRNA ligase Tax=Burkholderia multivorans CF2 RepID=J5C431_9BURK
Suspect SCG annotation. See neighboring gene [PLM3_127_b2_sep16_scaffold_327_28].
valS; valyl-tRNA synthetase
PLM3_127_b2_sep16_scaffold_327_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28957..30201
DNA (1245bp) protein (415aa)
Membrane protein, major facilitator superfamily Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EHN3_GEOBB
major facilitator superfamily transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Displaying items 1-30 of 69 in total

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