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PLM3_127_b2_sep16_scaffold_333

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_333_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(310..753)
DNA (444bp) protein (148aa)
General secretion pathway protein G Tax=Methylotenera sp. (strain 301) RepID=D7DMD2_METS0
general secretion pathway protein G
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_333_2
R_RIF_OP11_03_50_28, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

comp(951..3341)
DNA (2391bp) protein (797aa)
PGAP1 family protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
PGAP1 family protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_50_28_curated
PLM3_127_b2_sep16_scaffold_333_3
Pseudomonas sp. FGI182, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3351..3833)
DNA (483bp) protein (161aa)
Uncharacterized protein (Fragment) Tax=Pseudomonas putida S11 RepID=J8VCN9_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:AHD13219.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FGI182.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_333_4
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5068..8067)
DNA (3000bp) protein (1000aa)
Endoglucanase {ECO:0000256|RuleBase:RU361166}; EC=3.2.1.4 {ECO:0000256|RuleBase:RU361166};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
Endo-1,4-beta-xylanase A Tax=Cystobacter fuscus DSM 2262 RepID=S9PAV9_9DELT
hypothetical protein
PLM3_127_b2_sep16_scaffold_333_5
Pseudomonas sp. FGI182, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8994..9290
DNA (297bp) protein (99aa)
Uncharacterized protein (Fragment) Tax=Pseudomonas sp. GM49 RepID=J3G2D3_9PSED
Uncharacterized protein {ECO:0000313|EMBL:AHD13219.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FGI182.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_333_6
RLO_PLX_64_10, Bacteria

Not on your lists

9293..12895
DNA (3603bp) protein (1201aa)
PGAP1 family protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_127_b2_sep16_scaffold_333_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13256..14374)
DNA (1119bp) protein (373aa)
Secreted hydrolase Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GPS8_CUPNN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_333_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14401..16932)
DNA (2532bp) protein (844aa)
ABC transport system permease protein Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GPS9_CUPNN
secreted hydrolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_333_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17001..17690)
DNA (690bp) protein (230aa)
ABC transport system ATP-binding protein Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GPT0_CUPNN
ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_333_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17716..18252)
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Bradyrhizobium sp. STM 3843 RepID=H0TCP6_9BRAD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_333_11

Not on your lists

comp(18249..21971)
DNA (3723bp) protein (1241aa)
Peptidase M23 family protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6Y5_CALAS
Uncharacterized protein {ECO:0000313|EMBL:KKL78326.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidase M23 family protein
PLM3_127_b2_sep16_scaffold_333_12
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22623..22850
DNA (228bp) protein (76aa)
Gsl3556 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NFG9_GLOVI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_333_13
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22850..23236
DNA (387bp) protein (129aa)
Gll3555 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NFH0_GLOVI
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_333_14
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23339..23479
DNA (141bp) protein (47aa)
Uncharacterized protein Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SYZ9_META2
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_333_15
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23505..25778)
DNA (2274bp) protein (758aa)
adenylate cyclase (EC:4.6.1.1)
Adenylate cyclase bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM3_127_b2_sep16_scaffold_333_16
unknown

Not on your lists

comp(25775..25984)
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_333_17
unknown

Not on your lists

comp(26152..26826)
DNA (675bp) protein (225aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_333_18
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(26931..30494)
DNA (3564bp) protein (1188aa)
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI00036C514D
TPR repeat-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3_127_b2_sep16_scaffold_333_19
unknown

Not on your lists

comp(30946..31074)
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_333_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32039..32635
DNA (597bp) protein (199aa)
Transcriptional regulator, TetR family Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y845_NITMU
TetR family transcriptional regulator {ECO:0000313|EMBL:KIO49755.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
TetR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_333_21
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32702..33571
DNA (870bp) protein (290aa)
Uncharacterized protein Tax=Smithella sp. ME-1 RepID=V4FIN9_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESP63029.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_333_22
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33590..34150)
DNA (561bp) protein (187aa)
Isochorismatase hydrolase bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
isochorismatase hydrolase
Tax=GWC2_Geobacteraceae_55_20_curated
PLM3_127_b2_sep16_scaffold_333_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34275..35201
DNA (927bp) protein (309aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-137-I08 RepID=UPI000368C5D1
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_333_24
Actinopolyspora erythraea, Actinopolyspora, Actinopolysporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35315..36769
DNA (1455bp) protein (485aa)
hypothetical protein Tax=Actinopolyspora halophila RepID=UPI00036C563C
Phosphatase {ECO:0000313|EMBL:KGI82152.1}; species="Bacteria; Actinobacteria; Actinopolysporales; Actinopolysporaceae; Actinopolyspora.;" source="Actinopolyspora erythraea.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_333_25
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36860..37381
DNA (522bp) protein (174aa)
Uncharacterized protein Tax=Beggiatoa alba B18LD RepID=I3CEP8_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3_127_b2_sep16_scaffold_333_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37430..38914
DNA (1485bp) protein (495aa)
Putative uncharacterized protein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFY7_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98469.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM3_127_b2_sep16_scaffold_333_27
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38911..39345
DNA (435bp) protein (145aa)
Putative uncharacterized protein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFY8_THIDA
Uncharacterized protein {ECO:0000313|EMBL:KFB66335.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_333_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39426..40019
DNA (594bp) protein (198aa)
Putative lipoprotein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFY9_THIDA
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AAZ98467.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM3_127_b2_sep16_scaffold_333_29
unknown

Not on your lists

40124..40261
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_333_30
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40313..41245)
DNA (933bp) protein (311aa)
Dihydrodipicolinate synthetase Tax=Burkholderia sp. RPE64 RepID=R4WJS9_9BURK
dihydrodipicolinate synthetase
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:BAN24684.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
Displaying items 1-30 of 46 in total

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