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PLM3_127_b2_sep16_scaffold_406

Search features with annotation key words

Displaying items 31-60 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_406_31
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34026..34745
DNA (720bp) protein (240aa)
coenzyme PQQ biosynthesis protein C (EC:1.3.3.11)
Pyrroloquinoline-quinone synthase Tax=Beggiatoa alba B18LD RepID=I3CC96_9GAMM
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
PLM3_127_b2_sep16_scaffold_406_32
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34738..35031
DNA (294bp) protein (98aa)
pyrroloquinoline quinone biosynthesis protein PqqD Tax=Methylophilus methylotrophus RepID=UPI00036B49E0
pyrroloquinoline quinone biosynthesis protein d
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
PLM3_127_b2_sep16_scaffold_406_33

Not on your lists

34994..36139
DNA (1146bp) protein (382aa)
pyrroloquinoline quinone biosynthesis protein PqqE Tax=Methyloversatilis universalis RepID=UPI00036E1187
Uncharacterized protein {ECO:0000313|EMBL:KKN99093.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
pyrroloquinoline quinone biosynthesis protein PqqE
PLM3_127_b2_sep16_scaffold_406_34
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36156..37088
DNA (933bp) protein (311aa)
ABC transporter related protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1I6_NITHN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETX06870.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
ABC transporter
PLM3_127_b2_sep16_scaffold_406_35
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37091..37900
DNA (810bp) protein (270aa)
ABC-2 type transporter Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1I7_NITHN
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
multidrug ABC transporter
PLM3_127_b2_sep16_scaffold_406_36
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37981..38565)
DNA (585bp) protein (195aa)
Peptidyl-prolyl cis-trans isomerase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLR7_SIDLE
FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_406_37
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38572..39039)
DNA (468bp) protein (156aa)
Alkyl hydroperoxide reductase Tax=Sulfuricella denitrificans skB26 RepID=S6AGD8_9PROT
alkyl hydroperoxide reductase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_406_38
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39098..40279
DNA (1182bp) protein (394aa)
Cupin region Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X5_NITMU
hypothetical protein
Cupin region {ECO:0000313|EMBL:ABB74446.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
PLM3_127_b2_sep16_scaffold_406_39
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40228..40779
DNA (552bp) protein (184aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLS0_SIDLE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_406_40
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40901..41668)
DNA (768bp) protein (256aa)
Beta-lactamase domain-containing protein Tax=Sulfuricella denitrificans skB26 RepID=S6AKD7_9PROT
beta-lactamase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_406_41
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41711..42832)
DNA (1122bp) protein (374aa)
Putative lipoprotein Tax=Sulfuricella denitrificans skB26 RepID=S6ABW8_9PROT
putative lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_406_42
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42888..43796)
DNA (909bp) protein (303aa)
dihydrodipicolinate synthase (EC:4.3.3.7)
4-hydroxy-tetrahydrodipicolinate synthase Tax=Sulfuricella denitrificans skB26 RepID=S6B345_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_406_43
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44140..44676)
DNA (537bp) protein (179aa)
Tellurite resistance protein TehB Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJT2_AZOSU
Tellurite resistance protein TehB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_406_44
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44872..45414
DNA (543bp) protein (181aa)
sodC; superoxide dismutase (Cu-Zn) (EC:1.15.1.1)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393, ECO:0000313|EMBL:CAL61028.1}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393, ECO:0000313|EMBL:CAL61028.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
Superoxide dismutase [Cu-Zn] Tax=Herminiimonas arsenicoxydans RepID=A4G3E1_HERAR
PLM3_127_b2_sep16_scaffold_406_45
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45433..46131
DNA (699bp) protein (233aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6)
Leucyl/phenylalanyl-tRNA--protein transferase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=LFTR_NITMU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_406_46
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46128..46877
DNA (750bp) protein (250aa)
arginyl-tRNA-protein transferase (EC:2.3.2.8)
Putative arginyl-tRNA--protein transferase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=ATE_NITMU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_406_47
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46929..47954
DNA (1026bp) protein (342aa)
Dihydroorotate dehydrogenase (quinone) Tax=Nitrosospira sp. APG3 RepID=M5DFF2_9PROT
dihydroorotate dehydrogenase 2
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_406_48
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48056..51589
DNA (3534bp) protein (1178aa)
Uncharacterized protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9W8_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM3_127_b2_sep16_scaffold_406_49
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51822..52499
DNA (678bp) protein (226aa)
Electron transport complex protein RnfB Tax=Ralstonia sp. PBA RepID=I9W932_9RALS
electron transport complex protein: ferredoxin subunit (RfnB)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_406_50
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52714..53355
DNA (642bp) protein (214aa)
hypothetical protein Tax=Singularimonas variicoloris RepID=UPI000382D0FD
endonuclease III
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_406_51
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53397..53585)
DNA (189bp) protein (63aa)
Type I secretion membrane fusion protein, HlyD family Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RT66_ACCPU
HlyD family type I secretion membrane fusion protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_406_52
unknown

Not on your lists

54001..54240
DNA (240bp) protein (80aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_406_53
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54233..54517
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=Nitrosospira sp. APG3 RepID=M5DIB4_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM3_127_b2_sep16_scaffold_406_54
Lyngbya sp. PCC 8106, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(54793..55812)
DNA (1020bp) protein (340aa)
Uncharacterized protein Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YTI2_LYNSP
Uncharacterized protein {ECO:0000313|EMBL:EAW35653.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616)).;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_406_55
Lyngbya sp. PCC 8106, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(55825..57102)
DNA (1278bp) protein (426aa)
Uncharacterized protein Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YTI3_LYNSP
Uncharacterized protein {ECO:0000313|EMBL:EAW35654.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616)).;"
DNA methylase
PLM3_127_b2_sep16_scaffold_406_56

Not on your lists

comp(57691..58209)
DNA (519bp) protein (173aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1BEM9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD51504.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM3_127_b2_sep16_scaffold_406_57

Not on your lists

comp(58196..58999)
DNA (804bp) protein (268aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1A3P2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD51503.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_406_58
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59277..60104)
DNA (828bp) protein (276aa)
Uncharacterized protein Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6W8S1_ACTMD
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM3_127_b2_sep16_scaffold_406_59
Pseudomonas syringae group genomosp. 3, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60223..61047)
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Pseudomonas syringae pv. tomato (strain DC3000) RepID=Q87W25_PSESM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAO58184.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae pv. tomato (strain DC3000).;"
PLM3_127_b2_sep16_scaffold_406_60

Not on your lists

comp(61548..61640)
DNA (93bp) protein (31aa)
ISBma1, transposase (Fragment) Tax=mine drainage metagenome RepID=T0ZID9_9ZZZZ
ISBma1, transposase {ECO:0000313|EMBL:EQD44207.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Displaying items 31-60 of 60 in total

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