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PLM3_127_b2_sep16_scaffold_406

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_406_1
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..319)
DNA (318bp) protein (106aa)
UDP-glucose 6-dehydrogenase Tax=Burkholderiaceae RepID=Q0KDH2_CUPNH
nucleotide sugar dehydrogenase
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:BAO29775.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
PLM3_127_b2_sep16_scaffold_406_2
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(316..1029)
DNA (714bp) protein (238aa)
Orotidine 5'-phosphate decarboxylase bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
orotidine 5'-phosphate decarboxylase
Tax=GWA2_Gallionellales_59_43_curated
PLM3_127_b2_sep16_scaffold_406_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1026..2201)
DNA (1176bp) protein (392aa)
Tetratricopeptide repeat protein Tax=Sulfuricella denitrificans skB26 RepID=S6AFZ7_9PROT
tetratricopeptide repeat protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_406_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2328..2597)
DNA (270bp) protein (90aa)
hypothetical protein Tax=Chitiniphilus shinanonensis RepID=UPI000366ACC0
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_406_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2701..2988)
DNA (288bp) protein (96aa)
Integration host factor subunit beta Tax=Nitrosospira sp. APG3 RepID=M5DKF5_9PROT
Integration host factor subunit beta
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_406_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2997..4664)
DNA (1668bp) protein (556aa)
30S ribosomal protein S1 Tax=Nitrosospira sp. APG3 RepID=M5DL05_9PROT
rpsA; 30S ribosomal protein S1
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_406_7
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4785..6770)
DNA (1986bp) protein (662aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240533};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Azoarcus sp. KH32C RepID=H0Q2E2_9RHOO
aroO; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase
PLM3_127_b2_sep16_scaffold_406_8
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6774..7652)
DNA (879bp) protein (293aa)
tyrA; prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase {ECO:0000313|EMBL:CAI06612.1}; EC=1.3.1.12 {ECO:0000313|EMBL:CAI06612.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
prephenate dehydrogenase Tax=Azoarcus toluclasticus RepID=UPI000363247D
PLM3_127_b2_sep16_scaffold_406_9
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7681..8817)
DNA (1137bp) protein (379aa)
Histidinol-phosphate aminotransferase Tax=Thauera terpenica 58Eu RepID=S9Z925_9RHOO
histidinol-phosphate aminotransferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_406_10
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8814..9881)
DNA (1068bp) protein (356aa)
pheA; chorismate mutase/prephenate dehydratase (EC:5.4.99.5)
Chorismate mutase I / Prephenate dehydratase Tax=Nitrosospira sp. APG3 RepID=M5DL80_9PROT
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_406_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9881..11068)
DNA (1188bp) protein (396aa)
Phosphoglycerate dehydrogenase-like oxidoreductase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WI35_9BURK
phosphoglycerate dehydrogenase-like oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_406_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11061..12143)
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase Tax=Methylovorus RepID=C6XE04_METSD
serC; phosphoserine aminotransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_406_13
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12187..14850)
DNA (2664bp) protein (888aa)
DNA gyrase subunit A Tax=Nitrosospira sp. APG3 RepID=M5DKJ9_9PROT
DNA gyrase subunit A
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_406_14
unknown

Not on your lists

15191..15292
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_406_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15309..15968
DNA (660bp) protein (220aa)
OmpA/MotB Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6Z1_NITMU
OmpA/MotB
OmpA/MotB {ECO:0000313|EMBL:ABB75480.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
PLM3_127_b2_sep16_scaffold_406_16
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16033..17370
DNA (1338bp) protein (446aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.31 {ECO:0000256|HAMAP-Rule:MF_01281};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHV6_AZOSU
cytosine deaminase
PLM3_127_b2_sep16_scaffold_406_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17389..18084
DNA (696bp) protein (232aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase Tax=Nitrosospira sp. APG3 RepID=M5DJ26_9PROT
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
PLM3_127_b2_sep16_scaffold_406_18
unknown

Not on your lists

18169..18753
DNA (585bp) protein (195aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_406_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18770..19462
DNA (693bp) protein (231aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Similar to phosphoglycolate phosphatase,clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase Tax=Nitrosospira sp. APG3 RepID=M5DVN5_9PROT
phosphoglycolate phosphatase
PLM3_127_b2_sep16_scaffold_406_20
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19831..20748)
DNA (918bp) protein (306aa)
Putative esterase of the alpha-beta hydrolase superfamily Tax=Sulfuricella denitrificans skB26 RepID=S6ALL0_9PROT
Esterase {ECO:0000313|EMBL:GAO35508.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
putative esterase of the alpha-beta hydrolase superfamily
PLM3_127_b2_sep16_scaffold_406_21
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21235..21780)
DNA (546bp) protein (182aa)
Cytochrome Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VZG7_9BURK
Cytochrome B561 {ECO:0000313|EMBL:CDS54226.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
putative cytochrome b561
PLM3_127_b2_sep16_scaffold_406_22
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21846..22793)
DNA (948bp) protein (316aa)
Surface antigen Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VZG6_9BURK
YVTN beta-propeller repeat-containing protein
Tax=GWA2_Rhodocyclales_65_20_curated
PLM3_127_b2_sep16_scaffold_406_23
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23217..23909)
DNA (693bp) protein (231aa)
Two component transcriptional regulator, LuxR family Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H354_METFK
two component LuxR family transcriptional regulator
Tax=RBG_16_Gammaproteobacteria_51_14_curated
PLM3_127_b2_sep16_scaffold_406_24
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23906..25138)
DNA (1233bp) protein (411aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
PAS/PAC sensor signal transduction histidine kinase Tax=Methylovorus sp. (strain MP688) RepID=E4QK96_METS6
uhpB; PAS/PAC sensor signal transduction histidine kinase
PLM3_127_b2_sep16_scaffold_406_25
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25623..27968
DNA (2346bp) protein (782aa)
TonB-dependent receptor Tax=Burkholderia terrae BS001 RepID=I5D4G2_9BURK
TonB-dependent receptor {ECO:0000313|EMBL:EIN03031.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
TonB-dependent receptor
PLM3_127_b2_sep16_scaffold_406_26

Not on your lists

comp(28384..29040)
DNA (657bp) protein (219aa)
Two component transcriptional regulator, LuxR family Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H0K5_METFK
Uncharacterized protein {ECO:0000313|EMBL:KKN99099.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
uvrY; Response regulator UvrY
PLM3_127_b2_sep16_scaffold_406_27
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29055..30824)
DNA (1770bp) protein (590aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
Multi-sensor signal transduction histidine kinase Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H0K4_METFK
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
PLM3_127_b2_sep16_scaffold_406_28
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30821..31801)
DNA (981bp) protein (327aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
Proline iminopeptidase Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W9S4_MAGSA
hydrolase or acyltransferase
PLM3_127_b2_sep16_scaffold_406_29
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31820..32668)
DNA (849bp) protein (283aa)
TonB family protein Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GL23_THISH
TonB family protein
TonB family protein {ECO:0000313|EMBL:ACL71541.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM3_127_b2_sep16_scaffold_406_30

Not on your lists

33099..34013
DNA (915bp) protein (305aa)
Coenzyme PQQ synthesis protein B Tax=Methylovorus sp. (strain MP688) RepID=E4QI29_METS6
Uncharacterized protein {ECO:0000313|EMBL:KKN99096.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
coenzyme pqq biosynthesis protein b
Displaying items 1-30 of 60 in total

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