ggKbase home page

PLM3_127_b2_sep16_scaffold_492

Search features with annotation key words

Displaying items 31-52 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_492_31
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31329..31964)
DNA (636bp) protein (212aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6ADU9_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_492_32
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31971..33089)
DNA (1119bp) protein (373aa)
Penicillin-binding protein Tax=Sulfuricella denitrificans skB26 RepID=S6APC4_9PROT
penicillin-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_492_33
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33037..34278)
DNA (1242bp) protein (414aa)
Multimodular transpeptidase-transglycosylase {ECO:0000313|EMBL:CCU63299.1}; EC=2.4.1.129 {ECO:0000313|EMBL:CCU63299.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Multimodular transpeptidase-transglycosylase Tax=Nitrosospira sp. APG3 RepID=M5DKC7_9PROT
penicillin-binding protein, 1A family
PLM3_127_b2_sep16_scaffold_492_34
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34427..35533
DNA (1107bp) protein (369aa)
Type IV pilus assembly protein PilM Tax=Sulfuricella denitrificans skB26 RepID=S6ABH1_9PROT
type IV pilus assembly protein PilM
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_492_35
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35530..36147
DNA (618bp) protein (206aa)
Fimbrial assembly family protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTP5_SIDLE
Fimbrial protein {ECO:0000313|EMBL:GAO34842.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Fimbrial assembly family protein
PLM3_127_b2_sep16_scaffold_492_36
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36153..36797
DNA (645bp) protein (215aa)
Pilus assembly protein PilO Tax=Sulfuricella denitrificans skB26 RepID=S6B8U2_9PROT
pilus assembly protein PilO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_37
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36797..37315
DNA (519bp) protein (173aa)
Type IV pilus assembly protein PilP bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
type IV pilus assembly protein PilP
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_492_38
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37334..39466
DNA (2133bp) protein (711aa)
Type IV pilus secretin PilQ Tax=Sulfuricella denitrificans skB26 RepID=S6APC6_9PROT
type IV pilus secretin PilQ
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_492_39
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39559..40152
DNA (594bp) protein (198aa)
shikimate kinase Tax=Aquaspirillum serpens RepID=UPI0003B32927
aroK; shikimate kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_492_40
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40402..40698
DNA (297bp) protein (99aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
3-dehydroquinate synthase Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GYG7_METFK
PLM3_127_b2_sep16_scaffold_492_41
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40641..41351
DNA (711bp) protein (237aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase Tax=Dechloromonas aromatica (strain RCB) RepID=AROB_DECAR
Tax=CG_Hydro_01
PLM3_127_b2_sep16_scaffold_492_42
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41344..42465
DNA (1122bp) protein (374aa)
dgt; deoxyguanosinetriphosphate triphosphohydrolase-like protein (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein Tax=Sulfuricella denitrificans skB26 RepID=S6B8U6_9PROT
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
PLM3_127_b2_sep16_scaffold_492_43
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42642..47303
DNA (4662bp) protein (1554aa)
glutamate synthase (EC:1.4.7.1)
Glutamate synthase (Ferredoxin) Tax=Burkholderia graminis C4D1M RepID=B1G8M6_9BURK
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_492_44
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47382..48839
DNA (1458bp) protein (486aa)
gltD; glutamate synthase (EC:1.4.1.13)
Glutamate synthase subunit beta Tax=Pandoraea sp. SD6-2 RepID=R7WVR5_9BURK
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_492_45
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48925..49980
DNA (1056bp) protein (352aa)
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase Tax=Nitrosospira sp. APG3 RepID=M5DTZ9_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_46
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50318..52501
DNA (2184bp) protein (728aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Primosomal protein N Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GCN1_NITSI
primosomal protein N'
PLM3_127_b2_sep16_scaffold_492_47
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


52557..54302
DNA (1746bp) protein (582aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=SYR_NITMU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_48
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54339..54929
DNA (591bp) protein (197aa)
Sporulation related Tax=Sulfuricella denitrificans skB26 RepID=S6AKA1_9PROT
sporulation related
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_492_49
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54956..55609
DNA (654bp) protein (218aa)
Thiol:disulfide interchange protein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF78_THIDA
thiol:disulfide interchange protein DsbA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_50
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55629..56264
DNA (636bp) protein (212aa)
Thiol:disulfide interchange protein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF78_THIDA
thiol:disulfide interchange protein DsbA
Thiol:disulfide interchange protein {ECO:0000256|PIRNR:PIRNR001488}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM3_127_b2_sep16_scaffold_492_51
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56261..57037
DNA (777bp) protein (259aa)
Short-chain dehydrogenase/reductase SDR Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y679_NITMU
short chain dehydrogenase
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
PLM3_127_b2_sep16_scaffold_492_52
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57078..57443)
DNA (366bp) protein (122aa)
HAD-superfamily hydrolase, phosphatase Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP20_PARL1
HAD family phosphatase {ECO:0000313|EMBL:GAK43871.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
HAD family phosphatase
Displaying items 31-52 of 52 in total

View Taxonomy