ggKbase home page

PLM3_127_b2_sep16_scaffold_492

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_492_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143..2197
DNA (2055bp) protein (685aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6A9C7_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_2
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2273..2596
DNA (324bp) protein (108aa)
Probable cytochrome c-552 Tax=Azoarcus sp. (strain BH72) RepID=A1KBB0_AZOSB
cyt2; cytochrome c-552
Probable cytochrome c-552 {ECO:0000313|EMBL:CAL96116.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
PLM3_127_b2_sep16_scaffold_492_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2766..3989
DNA (1224bp) protein (408aa)
HAAT family ABC transporter periplasmic protein Tax=Cupriavidus sp. HMR-1 RepID=L2EI30_9BURK
extracellular ligand-binding receptor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_492_4
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4130..5122
DNA (993bp) protein (331aa)
Inner-membrane translocator Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RK27_ACCPU
inner-membrane translocator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_492_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5135..6211
DNA (1077bp) protein (359aa)
Inner-membrane translocator Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RK26_ACCPU
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM3_127_b2_sep16_scaffold_492_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6218..6997
DNA (780bp) protein (260aa)
Leucine/isoleucine/valine transport system ATP-binding protein Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NXX1_CHRVO
livG; leucine/isoleucine/valine transport system ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6994..7704
DNA (711bp) protein (237aa)
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily Tax=Ralstonia syzygii R24 RepID=G3A0Q4_9RALS
livF2; leucine/isoleucine/valine ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_8
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7761..8981
DNA (1221bp) protein (407aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane-fatty-acyl-phospholipid synthase Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q220H7_RHOFD
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_492_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9032..10363
DNA (1332bp) protein (444aa)
FAD linked oxidase-like bin=GWC2_Nitrospirae-rel_56_14 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
putative FAD-binding oxidase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10353..11270)
DNA (918bp) protein (306aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Coproporphyrinogen-III oxidase, aerobic Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCS7_NITMU
PLM3_127_b2_sep16_scaffold_492_11
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11277..12560)
DNA (1284bp) protein (428aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Phosphoribosylamine--glycine ligase Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X908_METSD
PLM3_127_b2_sep16_scaffold_492_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12787..14346)
DNA (1560bp) protein (520aa)
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3)
Bifunctional purine biosynthesis protein PurH bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_13
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14418..14654)
DNA (237bp) protein (79aa)
Fis family transcriptional regulator Tax=Sulfuricella denitrificans skB26 RepID=S6AAM8_9PROT
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_492_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14651..15658)
DNA (1008bp) protein (336aa)
tRNA-dihydrouridine synthase Tax=Nitrosospira sp. APG3 RepID=M5DF86_9PROT
dihydrouridine synthase TIM-barrel protein nifR3
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_492_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15736..16902)
DNA (1167bp) protein (389aa)
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SIC9_GALCS
UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_16
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16922..18223)
DNA (1302bp) protein (434aa)
Peptidase m24 Tax=Sulfuricella denitrificans skB26 RepID=S6ADC6_9PROT
pepP; peptidase m24
Peptidase m24 {ECO:0000313|EMBL:BAN36358.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_492_17
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18563..19183)
DNA (621bp) protein (207aa)
FMN-binding negative transcriptional regulator Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BCJ9_MEISD
Transcriptional regulator {ECO:0000313|EMBL:KFE68313.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
FMN-binding negative transcriptional regulator
PLM3_127_b2_sep16_scaffold_492_18
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19180..19863)
DNA (684bp) protein (228aa)
Nucleotidyl transferase Tax=Sulfuricella denitrificans skB26 RepID=S6AND4_9PROT
nucleotidyl transferase
Tax=GWA2_Gallionellales_60_18_curated
PLM3_127_b2_sep16_scaffold_492_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19893..20690)
DNA (798bp) protein (266aa)
Aminoglycoside phosphotransferase Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GZC2_METFK
aminoglycoside phosphotransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20951..23167
DNA (2217bp) protein (739aa)
LPS-assembly protein LptD Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTI1_SIDLE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23247..24551
DNA (1305bp) protein (435aa)
Chaperone SurA Tax=Sulfuricella denitrificans skB26 RepID=S6B7E4_9PROT
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_492_22
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24593..25375
DNA (783bp) protein (261aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Ribosomal RNA small subunit methyltransferase A Tax=Sulfuricella denitrificans skB26 RepID=S6AND8_9PROT
dimethyladenosine transferase
PLM3_127_b2_sep16_scaffold_492_23
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25372..25752)
DNA (381bp) protein (127aa)
gloA; lactoylglutathione lyase (EC:4.4.1.5)
Lactoylglutathione lyase {ECO:0000256|RuleBase:RU361179}; EC=4.4.1.5 {ECO:0000256|RuleBase:RU361179};; Glyoxalase I {ECO:0000256|RuleBase:RU361179}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella holmesii CDC-H809-BH.;"
Lactoylglutathione lyase Tax=Bordetella holmesii RepID=M5NN78_9BORD
PLM3_127_b2_sep16_scaffold_492_24
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25764..25952)
DNA (189bp) protein (63aa)
Rubredoxin Tax=Azoarcus sp. (strain BH72) RepID=A1KB62_AZOSB
Rubredoxin {ECO:0000256|RuleBase:RU003820}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
rubB; RubB protein
PLM3_127_b2_sep16_scaffold_492_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26028..26861
DNA (834bp) protein (278aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_492_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26845..27477
DNA (633bp) protein (211aa)
Thiamine-phosphate synthase Tax=Nitrococcus mobilis Nb-231 RepID=A4BSF2_9GAMM
thiamine monophosphate synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_492_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27488..28777
DNA (1290bp) protein (430aa)
hemL; glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase Tax=Sulfuricella denitrificans skB26 RepID=S6ADU5_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_492_28
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28790..29401)
DNA (612bp) protein (204aa)
hypothetical protein Tax=Chitiniphilus shinanonensis RepID=UPI00037015C2
soxE; cytochrome c oxidase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_492_29
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29477..30082
DNA (606bp) protein (202aa)
Probable GTP-binding protein EngB Tax=Sulfuricella denitrificans skB26 RepID=S6ABG9_9PROT
engB; ribosome biogenesis GTP-binding protein YsxC
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_492_30
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30338..31342
DNA (1005bp) protein (335aa)
hemB; porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase Tax=Sulfuricella denitrificans skB26 RepID=S6AK55_9PROT
Tax=CG_Beta_01
Displaying items 1-30 of 52 in total

View Taxonomy