ggKbase home page

PLM3_127_b2_sep16_scaffold_546

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_546_1
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(529..828)
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T083_META2
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_127_b2_sep16_scaffold_546_2
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(923..1810)
DNA (888bp) protein (296aa)
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DRH1_BRAJP
metal-dependent hydrolase
Uncharacterized protein {ECO:0000313|EMBL:BAL09316.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
PLM3_127_b2_sep16_scaffold_546_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1893..3854)
DNA (1962bp) protein (654aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AM04_9PROT
amyA; hypothetical protein
Glycosyl hydrolase {ECO:0000313|EMBL:GAO36728.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
PLM3_127_b2_sep16_scaffold_546_4
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4107..5804)
DNA (1698bp) protein (566aa)
Glycoside hydrolase family 57 bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
glycoside hydrolase family protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM3_127_b2_sep16_scaffold_546_5
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5818..7101)
DNA (1284bp) protein (428aa)
Glucose-1-phosphate adenylyltransferase Tax=Nitrosospira sp. APG3 RepID=M5DJX0_9PROT
glucose-1-phosphate adenylyltransferase
Tax=GWA2_Gallionellales_60_18_curated
PLM3_127_b2_sep16_scaffold_546_6
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7279..9465
DNA (2187bp) protein (729aa)
1,4-alpha-glucan branching enzyme GlgB Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GJH6_NITSI
1,4-alpha-glucan branching enzyme
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
PLM3_127_b2_sep16_scaffold_546_7
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9475..10938
DNA (1464bp) protein (488aa)
glycogen/starch synthase (EC:2.4.1.21)
Glycogen synthase Tax=Nitrosomonas sp. AL212 RepID=F9ZJ11_9PROT
Tax=RBG_16_Gallionellales_57_15_curated
PLM3_127_b2_sep16_scaffold_546_8
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11014..12339
DNA (1326bp) protein (442aa)
hypothetical protein Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI00037EA5E0
Uncharacterized protein {ECO:0000313|EMBL:KIL40466.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_546_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12364..13572
DNA (1209bp) protein (403aa)
hypothetical protein Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000367D079
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_546_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13569..14381
DNA (813bp) protein (271aa)
potassium-transporting ATPase subunit B Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00036DFC52
protein of unassigned function
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_546_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14580..15245
DNA (666bp) protein (222aa)
Uncharacterized protein Tax=Afipia felis ATCC 53690 RepID=K8NR86_AFIFE
putative N5-carboxyaminoimidazole ribonucleotide mutase (NCAIR) mutase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_546_12
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15411..15998)
DNA (588bp) protein (196aa)
LOG family protein
LOG family protein {ECO:0000313|EMBL:AJE02665.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
hypothetical protein; K06966 bin=bin7_NC10_sister species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
PLM3_127_b2_sep16_scaffold_546_13
CG_Elusi_01, Elusimicrobia, Elusimicrobia, Bacteria

Not on your lists

comp(16006..16527)
DNA (522bp) protein (174aa)
id=3426828 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=CG_Elusi_01
PLM3_127_b2_sep16_scaffold_546_14
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16551..17819)
DNA (1269bp) protein (423aa)
hypothetical protein Tax=Methylohalobius crimeensis RepID=UPI0003B7107C
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3_127_b2_sep16_scaffold_546_15
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17992..18984
DNA (993bp) protein (331aa)
Methyltransferase Tax=uncultured bacterium ws172H5 RepID=I1X4X5_9BACT
methyltransferase
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
PLM3_127_b2_sep16_scaffold_546_16
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19016..19402)
DNA (387bp) protein (129aa)
Putative ring-cleavage extradiol dioxygenase Tax=Rhizobium sp. CF122 RepID=J2RF22_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KIL39882.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
PLM3_127_b2_sep16_scaffold_546_17
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19785..22343)
DNA (2559bp) protein (853aa)
alpha-glucan phosphorylase (EC:2.4.1.1)
Alpha-glucan phosphorylase Tax=Sulfuricella denitrificans skB26 RepID=S6AHX0_9PROT
Alpha-glucan phosphorylase {ECO:0000313|EMBL:GAO37588.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
PLM3_127_b2_sep16_scaffold_546_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22448..23779)
DNA (1332bp) protein (444aa)
ATP-dependent protease ATPase subunit HslU Tax=Nitrosospira sp. APG3 RepID=M5DHU0_9PROT
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hslU; ATP-dependent protease ATP-binding subunit HslU
PLM3_127_b2_sep16_scaffold_546_19
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23936..24475)
DNA (540bp) protein (180aa)
peptidase Tax=Uliginosibacterium gangwonense RepID=UPI000372D248
peptidase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_546_20
unknown

Not on your lists

comp(24523..24753)
DNA (231bp) protein (77aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_546_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24858..25625)
DNA (768bp) protein (256aa)
ABC-3 protein Tax=Methylotenera sp. (strain 301) RepID=D7DHR2_METS0
ABC-3 protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
PLM3_127_b2_sep16_scaffold_546_22
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25628..26533)
DNA (906bp) protein (302aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI000370B046
periplasmic solute-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_546_23
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26614..28026)
DNA (1413bp) protein (471aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AI06_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34164.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_546_24
unknown

Not on your lists

comp(28098..28400)
DNA (303bp) protein (101aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_546_25
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28647..29279)
DNA (633bp) protein (211aa)
Phosphoglycerate mutase Tax=Thauera phenylacetica B4P RepID=N6ZNL9_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJC23308.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
PLM3_127_b2_sep16_scaffold_546_26
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29264..29677)
DNA (414bp) protein (138aa)
Glutathione-dependent formaldehyde-activating enzyme family protein 4 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SVU0_ALCXX
Glutathione-dependent formaldehyde-activating enzyme family protein 4 {ECO:0000313|EMBL:EGP47871.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
aldehyde-activating protein
PLM3_127_b2_sep16_scaffold_546_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29697..30884)
DNA (1188bp) protein (396aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CU52_SIDLE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_546_28
unknown

Not on your lists

31208..31321
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 28 items

View Taxonomy