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PLM3_127_b2_sep16_scaffold_699

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_699_1
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..803)
DNA (801bp) protein (267aa)
gcvT; glycine cleavage system T protein (EC:2.1.2.10)
Aminomethyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6AJN8_9PROT
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_699_2
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(814..1647)
DNA (834bp) protein (278aa)
MJ0042 family finger-like protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CPT8_SIDLE
MJ0042 family finger-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_699_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1658..2464)
DNA (807bp) protein (269aa)
Ribosomal protein L11 methyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6ADM5_9PROT
ribosomal protein L11 methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_699_4
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2576..3931)
DNA (1356bp) protein (452aa)
accC1; acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.4.1.2)
Probable biotin carboxylase (A subunit of acetyl-coa carboxylase) {ECO:0000313|EMBL:CAL93479.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CAL93479.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
Probable biotin carboxylase (A subunit of acetyl-coa carboxylase) Tax=Azoarcus sp. (strain BH72) RepID=A1K3S4_AZOSB
PLM3_127_b2_sep16_scaffold_699_5
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3984..4448)
DNA (465bp) protein (155aa)
accB; biotin carboxyl carrier protein of acetyl-CoA carboxylase (EC:6.4.1.2)
Acetyl-CoA biotin carboxyl carrier bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_699_6

Not on your lists

comp(4461..4955)
DNA (495bp) protein (165aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LIU1_RALME
Uncharacterized protein {ECO:0000313|EMBL:KKN45222.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_127_b2_sep16_scaffold_699_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5196..5723)
DNA (528bp) protein (176aa)
Cytochrome c-type biogenesis protein CcmG/DsbE,thiol:disulfide oxidoreductase Tax=Nitrosospira sp. APG3 RepID=M5DQZ3_9PROT
thioredoxin
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_699_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5720..6235)
DNA (516bp) protein (172aa)
Thiol:disulfide interchange protein DsbD (Fragment) Tax=uncultured microorganism RepID=F8UHK5_9ZZZZ
cytochrome C biogenesis protein transmembrane region
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_699_9
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6254..6601)
DNA (348bp) protein (116aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00036037FC
cutA1; divalent cation tolerance protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_699_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6653..7414)
DNA (762bp) protein (254aa)
Putative oxidoreductase protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P6H4_AROAE
oxidoreductase protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_699_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7506..8540
DNA (1035bp) protein (345aa)
Oxidoreductase FAD/NAD(P)-binding protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5J8_NITMU
CDP-6-deoxy-delta-3,4-glucoseen reductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_699_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8745..11510)
DNA (2766bp) protein (922aa)
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase Tax=Nitrosospira sp. APG3 RepID=M5DH56_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_699_13
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11540..12748)
DNA (1209bp) protein (403aa)
Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (Unrelated to HemY-type PPO in GramPositives) Tax=Nitrosospira sp. APG3 RepID=M5DQZ7_9PROT
HemY-like
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_699_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12783..13835)
DNA (1053bp) protein (351aa)
Uroporphyrin-III C-methyltransferase HemX Tax=Sulfuricella denitrificans skB26 RepID=S6AB90_9PROT
uroporphyrin-III C-methyltransferase HemX
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_699_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13856..14659)
DNA (804bp) protein (268aa)
uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5J5_NITMU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_699_16
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14665..15609)
DNA (945bp) protein (315aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5J4_NITMU
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
PLM3_127_b2_sep16_scaffold_699_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15718..16188)
DNA (471bp) protein (157aa)
ferritin Tax=Calothrix sp. PCC 7103 RepID=UPI0003009633
Ferritin and Dps
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_699_18
unknown

Not on your lists

comp(16287..16799)
DNA (513bp) protein (171aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_699_19
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16796..17569)
DNA (774bp) protein (258aa)
Two component transcriptional regulator, LytTR family Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLB4_SIDLE
LytTR family transcriptional regulator
Tax=GWA2_Gallionellales_60_18_curated
PLM3_127_b2_sep16_scaffold_699_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17566..18579)
DNA (1014bp) protein (338aa)
Two-component system sensor ATPase Tax=Sulfuricella denitrificans skB26 RepID=S6AB94_9PROT
two-component system sensor ATPase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_699_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18652..20061
DNA (1410bp) protein (470aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Argininosuccinate lyase Tax=Nitrosospira sp. APG3 RepID=M5DLT1_9PROT
argininosuccinate lyase
PLM3_127_b2_sep16_scaffold_699_22
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20082..20984
DNA (903bp) protein (301aa)
Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation Tax=Nitrosospira sp. APG3 RepID=M5DL20_9PROT
aph; phosphotransferase:kinase
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
PLM3_127_b2_sep16_scaffold_699_23
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21113..22411
DNA (1299bp) protein (433aa)
ABC transporter substrate-binding protein Tax=Alcaligenes RepID=U1YE68_9BURK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ERI33750.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
ABC transporter substrate-binding protein
PLM3_127_b2_sep16_scaffold_699_24
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22428..23324
DNA (897bp) protein (299aa)
Inner-membrane translocator Tax=Hoeflea phototrophica DFL-43 RepID=A9CZL9_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KGP01034.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
ABC transporter permease
PLM3_127_b2_sep16_scaffold_699_25
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23321..24262
DNA (942bp) protein (314aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI00035C9559
Branched-chain amino acid transport system permease protein LivM {ECO:0000313|EMBL:KEA64749.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
livM; high-affinity branched-chain amino acid transport system permease livM
PLM3_127_b2_sep16_scaffold_699_26
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24264..25046
DNA (783bp) protein (261aa)
Putative ATP-binding ABC transporter Tax=alpha proteobacterium BAL199 RepID=A8TUZ4_9PROT
Putative ATP-binding ABC transporter {ECO:0000313|EMBL:EDP63693.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative high-affinity branched-chain amino acid transporter, ATP-binding component of ABC transporter (livG-like)
PLM3_127_b2_sep16_scaffold_699_27
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25033..25683
DNA (651bp) protein (217aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI00037419A0
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KCV81669.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium atlanticum.;"
putative high-affinity branched-chain amino acid transporter, ATP-binding component of ABC transporter (livF-like)
PLM3_127_b2_sep16_scaffold_699_28
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25828..27051
DNA (1224bp) protein (408aa)
Conserved domain protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D7N2_MYXXD
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ABF91968.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
PLM3_127_b2_sep16_scaffold_699_29
Brenneria sp. EniD312, Brenneria, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27632..28996
DNA (1365bp) protein (455aa)
Cysteine synthase {ECO:0000313|EMBL:EHD20830.1}; EC=2.5.1.47 {ECO:0000313|EMBL:EHD20830.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Brenneria.;" source="Brenneria sp. EniD312.;"
Cysteine synthase Tax=Brenneria sp. EniD312 RepID=G7LU93_9ENTR
cystathionine beta-synthase
PLM3_127_b2_sep16_scaffold_699_30
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29396..30565
DNA (1170bp) protein (390aa)
Cystathionine gamma-synthase, PLP-dependent {ECO:0000313|EMBL:CDX41326.1}; EC=2.5.1.48 {ECO:0000313|EMBL:CDX41326.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
cystathionine beta-lyase Tax=Pseudomonas RepID=UPI000364AC6C
cystathionine gamma-lyase
Displaying items 1-30 of 41 in total

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