ggKbase home page

PLM3_127_b2_sep16_scaffold_739

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_739_1
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..722
DNA (720bp) protein (240aa)
ABC transporter related protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB82_NITMU
ABC transporter-like protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_739_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1020..1904
DNA (885bp) protein (295aa)
Murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6N4_NITMU
peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_739_3
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2424..3161
DNA (738bp) protein (246aa)
Predicted Fe-S oxidoreductase Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P2P2_AROAE
Fe-S oxidoreductase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_739_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3252..4661
DNA (1410bp) protein (470aa)
(Fe-S)-binding protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002E95421
iron-sulfur binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_739_5
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4673..5320
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QPR4_AZOSU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_739_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5665..6882
DNA (1218bp) protein (406aa)
Putative Na/H+ antiporter Tax=Herminiimonas arsenicoxydans RepID=A4G806_HERAR
Na/H+ antiporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_739_7
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6879..8015
DNA (1137bp) protein (379aa)
Carboxylate-amine ligase mma_2607 Tax=Janthinobacterium sp. (strain Marseille) RepID=CAAL_JANMA
carboxylate-amine ligase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_739_8
RIFOXYB2_FULL_PER_ii_54_17_curated, PER-ii, Bacteria

Not on your lists

8147..9523
DNA (1377bp) protein (459aa)
Sodium/hydrogen exchanger Tax=Beggiatoa sp. PS RepID=A7BR45_9GAMM
sodium/hydrogen exchanger
Tax=RIFOXYB2_FULL_PER_ii_54_17_curated
PLM3_127_b2_sep16_scaffold_739_9
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9612..10805
DNA (1194bp) protein (398aa)
Putative TRAP-type C4-dicarboxylate transport system, periplasmic component DctP subunit Tax=Methyloversatilis universalis FAM5 RepID=F5RI71_9RHOO
Putative TRAP-type C4-dicarboxylate transport system, periplasmic component DctP subunit {ECO:0000313|EMBL:EGK70053.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
TRAP dicarboxylate transporter subunit DctP
PLM3_127_b2_sep16_scaffold_739_10
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10866..11453
DNA (588bp) protein (196aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002FCE979
Membrane protein {ECO:0000313|EMBL:KFI06394.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
dctQ1; TRAP-type mannitol/chloroaromatic compound transport system, small permease component
PLM3_127_b2_sep16_scaffold_739_11
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11450..12874
DNA (1425bp) protein (475aa)
TRAP transporter, DctM subunit Tax=Microvirga sp. WSM3557 RepID=I4YU10_9RHIZ
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KFG70073.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
TRAP dicarboxylate transporter subunit DctM
PLM3_127_b2_sep16_scaffold_739_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12911..13900
DNA (990bp) protein (330aa)
Lactate dehydrogenase-like oxidoreductase Tax=Ralstonia pickettii OR214 RepID=R0CF45_RALPI
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_739_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14275..15591
DNA (1317bp) protein (439aa)
Putative amidase Tax=mine drainage metagenome RepID=E6PK59_9ZZZZ
amidase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_739_14
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15824..16672
DNA (849bp) protein (283aa)
hypothetical protein Tax=Lamprocystis purpurea RepID=UPI0003708F73
3-hydroxyisobutyrate dehydrogenase
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_739_15
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16896..17774
DNA (879bp) protein (293aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
Tax=RBG_16_Gamma2_60_9_curated
PLM3_127_b2_sep16_scaffold_739_16
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18051..22022
DNA (3972bp) protein (1324aa)
ATP-dependent helicase HrpA Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0B6_NITHN
ATP-dependent helicase HrpA
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_739_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22084..24237
DNA (2154bp) protein (718aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8)
indolepyruvate ferredoxin subunit alpha Tax=Caldimonas manganoxidans RepID=UPI00037B36C0
Variovorax paradoxus strain MEDvA23 contig_110, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ19094.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
PLM3_127_b2_sep16_scaffold_739_18
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24234..25811
DNA (1578bp) protein (526aa)
hypothetical protein Tax=Caldimonas manganoxidans RepID=UPI00037F4A4C
indolepyruvate ferredoxin oxidoreductase subunit beta
Indolepyruvate ferredoxin oxidoreductase beta subunit-like protein {ECO:0000313|EMBL:AEG94357.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
PLM3_127_b2_sep16_scaffold_739_19
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25906..26334
DNA (429bp) protein (143aa)
CBS domain containing membrane protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
CBS domain containing membrane protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
Displaying 19 items

View Taxonomy