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PLM3_127_b2_sep16_scaffold_900

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_900_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..932)
DNA (930bp) protein (310aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Methionine--tRNA ligase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=SYM_NITMU
methionyl-tRNA synthetase
PLM3_127_b2_sep16_scaffold_900_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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968..2131
DNA (1164bp) protein (388aa)
Uncharacterized protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7L0_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_900_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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2339..2911
DNA (573bp) protein (191aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
deoxycytidine triphosphate deaminase Tax=Herbaspirillum sp. JC206 RepID=UPI0003152228
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_900_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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3442..5112
DNA (1671bp) protein (557aa)
Arginine decarboxylase (EC:4.1.1.19 4.1.1.18 4.1.1.17)
Orn/Lys/Arg decarboxylase, major domain protein Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XJE4_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_900_5

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comp(5182..5700)
DNA (519bp) protein (173aa)
folA; dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Dihydrofolate reductase Tax=Bordetella bronchiseptica 253 RepID=K4QLZ5_BORBO
PLM3_127_b2_sep16_scaffold_900_6
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5725..6078)
DNA (354bp) protein (118aa)
S23 ribosomal protein Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SJX5_GALCS
S23 ribosomal protein
S23 ribosomal protein {ECO:0000313|EMBL:ADL54474.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
PLM3_127_b2_sep16_scaffold_900_7

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comp(6168..6962)
DNA (795bp) protein (265aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase Tax=Sulfuricella denitrificans skB26 RepID=S6AAD6_9PROT
PLM3_127_b2_sep16_scaffold_900_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7122..8282
DNA (1161bp) protein (387aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000255|HAMAP-Rule:MF_00300}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Chorismate synthase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=AROC_NITMU
PLM3_127_b2_sep16_scaffold_900_9
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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8297..8848
DNA (552bp) protein (184aa)
hypothetical protein Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00036C64E6
Uncharacterized protein {ECO:0000313|EMBL:EXI86321.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_900_10
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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8864..10024
DNA (1161bp) protein (387aa)
Transporter Tax=Sulfuricella denitrificans skB26 RepID=S6ABH5_9PROT
transporter
Tax=CG_Beta_01
PLM3_127_b2_sep16_scaffold_900_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10088..11497
DNA (1410bp) protein (470aa)
3-isopropylmalate dehydratase large subunit Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QIS3_AZOSU
3-isopropylmalate dehydratase large subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_900_12
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11520..11657
DNA (138bp) protein (46aa)
Entericidin {ECO:0000313|EMBL:GAO36313.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
PLM3_127_b2_sep16_scaffold_900_13
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11660..12301
DNA (642bp) protein (214aa)
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit Tax=Methylibium petroleiphilum (strain PM1) RepID=LEUD_METPP
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM3_127_b2_sep16_scaffold_900_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12393..13463
DNA (1071bp) protein (357aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase Tax=Sulfuricella denitrificans skB26 RepID=S6AFP9_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_900_15
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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13479..14648
DNA (1170bp) protein (390aa)
Aspartate-semialdehyde dehydrogenase Tax=Methylovorus sp. (strain MP688) RepID=E4QI52_METS6
asd; aspartate-semialdehyde dehydrogenase
Tax=RBG_16_Gamma2_65_34_curated
PLM3_127_b2_sep16_scaffold_900_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14804..17545
DNA (2742bp) protein (914aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI00036B4DC3
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_900_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17660..18460
DNA (801bp) protein (267aa)
tRNA pseudouridine synthase A Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QIR6_AZOSU
pseudouridylate synthase I
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_900_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18483..19106
DNA (624bp) protein (208aa)
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase Tax=Sulfuricella denitrificans skB26 RepID=S6AFQ6_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_900_19
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19093..20310
DNA (1218bp) protein (406aa)
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JMC4_BURVG
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_900_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20417..21217
DNA (801bp) protein (267aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=TRPA_CUPPJ
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_900_21
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21288..22151
DNA (864bp) protein (288aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta Tax=Sulfuricella denitrificans skB26 RepID=S6AFR0_9PROT
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
PLM3_127_b2_sep16_scaffold_900_22
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22391..23668
DNA (1278bp) protein (426aa)
FolC bifunctional protein Tax=Sulfuricella denitrificans skB26 RepID=S6B258_9PROT
FolC bifunctional protein
FolC bifunctional protein {ECO:0000313|EMBL:BAN34727.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_900_23
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23665..24297
DNA (633bp) protein (211aa)
hypothetical protein Tax=Methyloversatilis universalis RepID=UPI000369A464
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3_127_b2_sep16_scaffold_900_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24390..24881
DNA (492bp) protein (164aa)
Colicin V production protein Tax=Nitrosospira sp. APG3 RepID=M5DKR2_9PROT
colicin V production protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_900_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24956..26476
DNA (1521bp) protein (507aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase Tax=Nitrosospira sp. APG3 RepID=M5DLF1_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_900_26
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26688..26921
DNA (234bp) protein (78aa)
O-succinylhomoserine sulfhydrylase (EC:2.5.1.48)
O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase Tax=Nitrosospira sp. APG3 RepID=M5DKT5_9PROT
O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:KIO49045.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Displaying 26 items

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