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PLM3_127_b2_sep16_scaffold_1028_22

Organism: PLM3_127_b2_sep16_Betaproteobacteria_Methylophilales_62_20

near complete RP 52 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 2
Location: comp(21776..22015)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq Tax=beta proteobacterium L13 RepID=UPI00035F0D7E similarity UNIREF
DB: UNIREF100
  • Identity: 93.3
  • Coverage: 75.0
  • Bit_score: 142
  • Evalue 9.60e-32
hfq; host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 87.2
  • Coverage: 78.0
  • Bit_score: 141
  • Evalue 6.00e-32
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.2
  • Coverage: 78.0
  • Bit_score: 141
  • Evalue 3.00e-31

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Taxonomy

Chromobacterium violaceum → Chromobacterium → Neisseriales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 240
ATGGGCGCGAAAGGGCAATTGTTACAAGACCCGTTTCTGAATGCGTTGCGCAAGGAGCATGTGCCGGTTTCGATCTACCTCGTCAATGGCATCAAATTGCAGGGTCAGATCGAGTCATTCGATCAATACGTGGTGTTGCTGAAGAACACCGTGACGCAAATGGTGTACAAGCACGCGATATCCACCGTCGTGCCCGCACGTCCGGTGAACTTGCCTTTGGAGCACGGGTCCGAAGACTGA
PROTEIN sequence
Length: 80
MGAKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGQIESFDQYVVLLKNTVTQMVYKHAISTVVPARPVNLPLEHGSED*