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PLM3_127_b2_sep16_scaffold_1028

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1028_1
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..644)
DNA (642bp) protein (214aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00001267}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387};; EC=2.3.1.129 {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00001267};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6AL94_9PROT
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
PLM3_127_b2_sep16_scaffold_1028_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(641..1108)
DNA (468bp) protein (156aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ Tax=Methylovorus RepID=C6XDM0_METSD
beta-hydroxyacyl-(acyl-carrier-protein) dehydratase fabz
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1028_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1105..2151)
DNA (1047bp) protein (349aa)
UDP-3-O-acylglucosamine N-acyltransferase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSD8_SIDLE
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1028_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2235..2594)
DNA (360bp) protein (120aa)
Outer membrane protein Tax=Sulfuricella denitrificans skB26 RepID=S6B4A0_9PROT
ompH; outer membrane protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1028_5
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2651..4918)
DNA (2268bp) protein (756aa)
Outer membrane protein assembly factor BamA Tax=Sulfuricella denitrificans skB26 RepID=S6ACC0_9PROT
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
surface antigen (D15)
PLM3_127_b2_sep16_scaffold_1028_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4925..6289)
DNA (1365bp) protein (455aa)
Membrane-associated zinc metalloprotease Tax=Nitrosospira sp. APG3 RepID=M5DNM1_9PROT
peptidase M50 membrane-associated zinc metallopeptidase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1028_7
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6297..7478)
DNA (1182bp) protein (394aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase Tax=Thauera RepID=C4ZPR6_THASP
Tax=GWA2_Rhodocyclales_65_20_curated
PLM3_127_b2_sep16_scaffold_1028_8
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7475..8368)
DNA (894bp) protein (298aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Phosphatidate cytidylyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6AH59_9PROT
phosphatidate cytidylyltransferase
PLM3_127_b2_sep16_scaffold_1028_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8343..9134)
DNA (792bp) protein (264aa)
Isoprenyl transferase Tax=Thauera terpenica 58Eu RepID=S9ZH29_9RHOO
undecaprenyl diphosphate synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1028_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9142..9702)
DNA (561bp) protein (187aa)
ribosome recycling factor Tax=Herbaspirillum sp. JC206 RepID=UPI0002FDB60A
frr; ribosome recycling factor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_1028_11
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9723..10436)
DNA (714bp) protein (238aa)
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase Tax=Methylovorus RepID=C6XDM9_METSD
Tax=BJP_S1_SUB10_Methylophilales_55_32
PLM3_127_b2_sep16_scaffold_1028_12
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10457..11341)
DNA (885bp) protein (295aa)
Elongation factor Ts Tax=Nitrosomonas sp. AL212 RepID=F9ZJC0_9PROT
translation elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
PLM3_127_b2_sep16_scaffold_1028_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11442..12188)
DNA (747bp) protein (249aa)
30S ribosomal protein S2 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RS2_NITMU
rpsB; 30S ribosomal protein S2
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1028_14
CG_Gallio_03, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12400..13161)
DNA (762bp) protein (254aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SFI7_GALCS
TrmH family RNA methyltransferase
Tax=CG_Gallio_03
PLM3_127_b2_sep16_scaffold_1028_15
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13158..15386)
DNA (2229bp) protein (743aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
ribonuclease R (EC:3.1.13.1)
Ribonuclease R Tax=Sulfuricella denitrificans skB26 RepID=S6AHI1_9PROT
PLM3_127_b2_sep16_scaffold_1028_trna_1
unknown

Not on your lists

15463..15546
DNA (84bp)
transferRNA Leu
PLM3_127_b2_sep16_scaffold_1028_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15596..16897)
DNA (1302bp) protein (434aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
purA; adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase Tax=Nitrosospira sp. APG3 RepID=M5DG10_9PROT
PLM3_127_b2_sep16_scaffold_1028_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16931..18091)
DNA (1161bp) protein (387aa)
ATP phosphoribosyltransferase regulatory subunit Tax=Nitrosospira sp. APG3 RepID=M5DPJ8_9PROT
ATP phosphoribosyltransferase regulatory subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1028_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18168..18350)
DNA (183bp) protein (61aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6ALN7_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1028_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18446..19327)
DNA (882bp) protein (294aa)
Protein HflC Tax=Nitrosospira sp. APG3 RepID=M5DG98_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM3_127_b2_sep16_scaffold_1028_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19324..20502)
DNA (1179bp) protein (393aa)
HflK protein Tax=Nitrosospira sp. APG3 RepID=M5DGM1_9PROT
HflK protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3_127_b2_sep16_scaffold_1028_21
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20549..21667)
DNA (1119bp) protein (373aa)
GTPase HflX Tax=Sulfuricella denitrificans skB26 RepID=S6B4W2_9PROT
GTP-binding proten HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM3_127_b2_sep16_scaffold_1028_22
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21776..22015)
DNA (240bp) protein (80aa)
RNA-binding protein Hfq Tax=beta proteobacterium L13 RepID=UPI00035F0D7E
hfq; host factor-I protein
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
PLM3_127_b2_sep16_scaffold_1028_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22103..23434)
DNA (1332bp) protein (444aa)
GTPase Der Tax=Nitrosospira sp. APG3 RepID=M5DKY3_9PROT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
engA; GTP-binding protein EngA
Displaying 24 items

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