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PLM3_127_b2_sep16_scaffold_2021

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2021_1
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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3..407
DNA (405bp) protein (135aa)
Transposase IS4 family protein Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WCS4_ACTMD
transposase IS4 family protein
Transposase IS4 family protein {ECO:0000313|EMBL:ACU35691.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM3_127_b2_sep16_scaffold_2021_2
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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959..4303
DNA (3345bp) protein (1115aa)
Ti-type conjugative transfer relaxase TraA Tax=Patulibacter medicamentivorans RepID=H0E9B9_9ACTN
Ti-type conjugative transfer relaxase TraA {ECO:0000313|EMBL:EHN09729.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
ATP-dependent exoDNAse (exonuclease V) subunit alpha
PLM3_127_b2_sep16_scaffold_2021_3
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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4328..5137
DNA (810bp) protein (270aa)
Uncharacterized protein Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2KAL7_STRHJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY94360.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
PLM3_127_b2_sep16_scaffold_2021_4
unknown

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5189..5350
DNA (162bp) protein (54aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2021_5
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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5432..6025
DNA (594bp) protein (198aa)
Uncharacterized protein Tax=Thauera phenylacetica B4P RepID=N6YMP6_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENO95606.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
PLM3_127_b2_sep16_scaffold_2021_6
RIFOXYA1_FULL_Chromatiales_46_5_curated, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6131..7090)
DNA (960bp) protein (320aa)
hypothetical protein Tax=Methylomonas sp. MK1 RepID=UPI0003665C58
restriction endonuclease
Tax=RIFOXYA1_FULL_Chromatiales_46_5_curated
PLM3_127_b2_sep16_scaffold_2021_7
Candidatus Omnitrophus sp. SKK-01, Candidatus Omnitrophus, Omnitrophica, Bacteria

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7224..7937
DNA (714bp) protein (238aa)
IS630 family transposase Tax=Saccharopolyspora erythraea RepID=A4FJF8_SACEN
Transposase ISLbp6 {ECO:0000313|EMBL:KJJ85336.1}; species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;"
IS630 family transposase
PLM3_127_b2_sep16_scaffold_2021_8
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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7969..8508
DNA (540bp) protein (180aa)
hypothetical protein Tax=Streptomyces viridosporus RepID=UPI00037CF2E3
IS630 family transposase {ECO:0000313|EMBL:EKT79052.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
IS630 family transposase
PLM3_127_b2_sep16_scaffold_2021_9
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

8910..11663
DNA (2754bp) protein (918aa)
Uncharacterized protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAA6_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ40749.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3_127_b2_sep16_scaffold_2021_10
unknown

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comp(12714..13676)
DNA (963bp) protein (321aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2021_11
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(14088..14333)
DNA (246bp) protein (82aa)
Uncharacterized protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B2L5_FRADG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH08771.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM3_127_b2_sep16_scaffold_2021_12
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(14424..14714)
DNA (291bp) protein (97aa)
single-stranded DNA-binding protein Tax=Actinopolyspora halophila RepID=UPI0003632791
ssb; single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
Displaying 12 items

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