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PLM3_127_b2_sep16_scaffold_16

Search features with annotation key words

Displaying items 1-30 of 164 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_16_1
unknown

Not on your lists

1..126
DNA (126bp) protein (42aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_16_2
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(205..1515)
DNA (1311bp) protein (437aa)
glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000255|HAMAP-Rule:MF_00375}; Short=GSA {ECO:0000255|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000255|HAMAP-Rule:MF_00375};; Glutamate-1-semialdehyde aminotransferase {ECO:0000255|HAMAP-Rule:MF_00375}; Short=GSA-AT {ECO:0000255|HAMAP-Rule:MF_00375};; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
Glutamate-1-semialdehyde 2,1-aminomutase Tax=Thermobifida fusca RepID=GSA_THEFY
PLM3_127_b2_sep16_scaffold_16_3
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(1512..2519)
DNA (1008bp) protein (336aa)
Aldo/keto reductase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AY12_RUBXD
aldo/keto reductase
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3_127_b2_sep16_scaffold_16_4
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2774..4423
DNA (1650bp) protein (550aa)
Phospholipase D family protein Tax=Micromonospora sp. (strain L5) RepID=E8S0M9_MICSL
phospholipase d family protein
Phospholipase D {ECO:0000313|EMBL:EWM64579.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
PLM3_127_b2_sep16_scaffold_16_5
RLO_PLX_64_10, Bacteria

Not on your lists

comp(4611..4784)
DNA (174bp) protein (58aa)
hypothetical protein bin=bin5_DeltaP species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin5_DeltaP organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_127_b2_sep16_scaffold_16_6
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(4846..5868)
DNA (1023bp) protein (341aa)
Putative esterase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TP15_9CHLR
Putative esterase {ECO:0000313|EMBL:EFH85551.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
esterase
PLM3_127_b2_sep16_scaffold_16_7
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6029..6706
DNA (678bp) protein (226aa)
Uncharacterized protein Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LWQ4_ACIC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK53864.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_127_b2_sep16_scaffold_16_8
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6774..7265
DNA (492bp) protein (164aa)
Arabinose efflux permease family protein Tax=Frankia sp. QA3 RepID=I8ZYD7_9ACTO
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIV92076.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
N-acetyltransferase GCN5
PLM3_127_b2_sep16_scaffold_16_9
Kitasatospora griseola, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8053..8964
DNA (912bp) protein (304aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI00036559E4
Kitasatospora griseola strain MF730-N6 RKJC_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ61514.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora griseola (Streptomyces griseolosporeus).;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_16_10
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9000..9908
DNA (909bp) protein (303aa)
Uncharacterized protein Tax=Micromonospora sp. (strain L5) RepID=E8S6W7_MICSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL49276.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM3_127_b2_sep16_scaffold_16_11
unknown

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9993..10283
DNA (291bp) protein (97aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_16_12
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

10280..10948
DNA (669bp) protein (223aa)
HAD-superfamily hydrolase subfamily IA variant 3 Tax=Patulibacter medicamentivorans RepID=H0E0R5_9ACTN
HAD-superfamily hydrolase subfamily IA variant 3 {ECO:0000313|EMBL:EHN12679.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
HAD-superfamily hydrolase subfamily IA
PLM3_127_b2_sep16_scaffold_16_13
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(11010..12134)
DNA (1125bp) protein (375aa)
formamidase (Formamide amidohydrolase) (EC:3.5.1.49)
Formamidase (Formamide amidohydrolase) {ECO:0000313|EMBL:ACM06595.1}; EC=3.5.1.49 {ECO:0000313|EMBL:ACM06595.1};; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
Formamidase (Formamide amidohydrolase) Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L432_THERP
PLM3_127_b2_sep16_scaffold_16_14
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12165..13148)
DNA (984bp) protein (328aa)
porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
delta-aminolevulinic acid dehydratase Tax=Nocardiopsis halotolerans RepID=UPI000347E32B
PLM3_127_b2_sep16_scaffold_16_15
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

Not on your lists

comp(13202..14722)
DNA (1521bp) protein (507aa)
uroporphyrin-III C-methyltransferase (EC:2.1.1.107 4.2.1.75)
Uroporphyrin-III C-methyltransferase Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B6M4_DESCC
Tax=RBG_16_Chloroflexi_60_22_curated
PLM3_127_b2_sep16_scaffold_16_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14719..15684)
DNA (966bp) protein (322aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_16_17
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15677..16963)
DNA (1287bp) protein (429aa)
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
Glutamyl-tRNA reductase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A493_THECD
PLM3_127_b2_sep16_scaffold_16_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16939..17565)
DNA (627bp) protein (209aa)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI00036814FB
siroheme synthase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_16_19
Streptomyces sp. NTK 937, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17576..18331)
DNA (756bp) protein (252aa)
Redox-sensing transcriptional repressor Rex Tax=Streptomyces RepID=REX_STRCO
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NTK 937.;"
rex; Redox-sensing transcriptional repressor rex
PLM3_127_b2_sep16_scaffold_16_20
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(18371..18619)
DNA (249bp) protein (83aa)
Glutaredoxin 2 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FBQ5_CONWI
glutaredoxin
Glutaredoxin 2 {ECO:0000313|EMBL:ADB51320.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_127_b2_sep16_scaffold_16_21
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(18616..19311)
DNA (696bp) protein (232aa)
Hypothetical membrane protein Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZU2_ANATU
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_16_22
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

19477..20295
DNA (819bp) protein (273aa)
Xylose isomerase domain protein TIM barrel Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y9R9_THEBD
xylose isomerase domain-containing protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_16_23
unknown

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20548..20637
DNA (90bp) protein (30aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_16_24
Polysphondylium pallidum, Polysphondylium, Dictyosteliida, Eukaryota

Not on your lists

20634..22010
DNA (1377bp) protein (459aa)
Uncharacterized protein Tax=Polysphondylium pallidum RepID=D3AZE0_POLPA
Uncharacterized protein {ECO:0000313|EMBL:EFA85523.1}; species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Polysphondylium.;" source="Polysphondylium pallidum (Cellular slime mold).;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_16_25
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22043..24010)
DNA (1968bp) protein (656aa)
hypothetical protein Tax=Frankia sp. BCU110501 RepID=UPI00035FF6A4
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:EIV94233.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
phospholipid/glycerol acyltransferase
PLM3_127_b2_sep16_scaffold_16_26
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24010..24825)
DNA (816bp) protein (272aa)
Putative uncharacterized protein Tax=Frankia sp. (strain EAN1pec) RepID=A8LDH4_FRASN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW15482.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_127_b2_sep16_scaffold_16_27
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(24904..25797)
DNA (894bp) protein (298aa)
GTPase or GTP-binding protein-like protein Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RCZ7_AMMDK
GTPase or GTP-binding protein-like protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_16_28
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25794..26561)
DNA (768bp) protein (256aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI0003824D36
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ83560.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_127_b2_sep16_scaffold_16_29
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26639..27793)
DNA (1155bp) protein (385aa)
Histone deacetylase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A4A5_THECD
Histone deacetylase
Histone deacetylase {ECO:0000313|EMBL:ACY99979.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_127_b2_sep16_scaffold_16_30
unknown

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comp(27894..28646)
DNA (753bp) protein (251aa)

This feature has no annotations

Displaying items 1-30 of 164 in total

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