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PLM3_127_b2_sep16_scaffold_25

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Displaying items 61-90 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_25_61
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

69616..69876
DNA (261bp) protein (87aa)
Putative transglycosylase associated protein Tax=Frankia sp. (strain EuI1c) RepID=E3J586_FRASU
transglycosylase associated protein
Putative transglycosylase associated protein {ECO:0000313|EMBL:ADP80684.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_127_b2_sep16_scaffold_25_62
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

70058..72184
DNA (2127bp) protein (709aa)
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:AHG88463.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Diguanylate cyclase/phosphodiesterase bin=GWC2_Chloroflexi_73_18 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
PLM3_127_b2_sep16_scaffold_25_63
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(72216..72692)
DNA (477bp) protein (159aa)
XRE family transcriptional regulator Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2WU05_9PSEU
XRE family transcriptional regulator {ECO:0000313|EMBL:EME52246.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
XRE family transcriptional regulator
PLM3_127_b2_sep16_scaffold_25_64
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

72894..73241
DNA (348bp) protein (116aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037E815D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50884.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM3_127_b2_sep16_scaffold_25_65
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(73400..75211)
DNA (1812bp) protein (604aa)
(NiFe) hydrogenase maturation protein HypF Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ATK9_STRRD
HAD family hydrolase {ECO:0000313|EMBL:ETK34077.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
(NiFe) hydrogenase maturation protein HypF
PLM3_127_b2_sep16_scaffold_25_66
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75348..76229)
DNA (882bp) protein (294aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G757_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27625.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM3_127_b2_sep16_scaffold_25_67
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(76507..77559)
DNA (1053bp) protein (351aa)
Peptidase M48, Ste24p Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LUT3_ACIC1
peptidase M48, Ste24p
Peptidase M48, Ste24p {ECO:0000313|EMBL:ABK53193.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_127_b2_sep16_scaffold_25_68
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(77576..78562)
DNA (987bp) protein (329aa)
Poly-beta-hydroxybutyrate polymerase domain protein Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7Z3_NAKMY
poly-beta-hydroxybutyrate polymerase domain-containing protein
Poly-beta-hydroxybutyrate polymerase domain protein {ECO:0000313|EMBL:ACV80996.1}; species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
PLM3_127_b2_sep16_scaffold_25_69
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(78562..78915)
DNA (354bp) protein (118aa)
hypothetical protein Tax=Mycobacterium avium RepID=UPI00030198E4
poly-beta-hydroxybutyrate polymerase domain-containing protein
Poly-beta-hydroxybutyrate polymerase domain protein {ECO:0000313|EMBL:ACV80379.1}; species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
PLM3_127_b2_sep16_scaffold_25_70
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

79582..79947
DNA (366bp) protein (122aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI0003707D0B
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEA25180.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_127_b2_sep16_scaffold_25_71
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

80081..80413
DNA (333bp) protein (111aa)
DNA-binding SAP domain protein Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XB62_NAKMY
DNA-binding SAP domain-containing protein
DNA-binding SAP domain protein {ECO:0000313|EMBL:ACV81354.1}; species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
PLM3_127_b2_sep16_scaffold_25_72
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

80655..81941
DNA (1287bp) protein (429aa)
Extracellular ligand-binding receptor bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC-type branched-chain amino acid transport systems, extracellular component
Tax=RBG_16_Chloroflexi_57_9_curated
PLM3_127_b2_sep16_scaffold_25_73
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

81948..82820
DNA (873bp) protein (291aa)
Branched-chain amino acid ABC transporter, permease protein Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX32_BLASD
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) {ECO:0000313|EMBL:CEL20292.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
branched-chain amino acid ABC transporter permease
PLM3_127_b2_sep16_scaffold_25_74
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82817..84718
DNA (1902bp) protein (634aa)
ABC transporter Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000347CCD6
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACB24883.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
PLM3_127_b2_sep16_scaffold_25_75
Streptomyces sp. NRRL S-444, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

84720..85526
DNA (807bp) protein (269aa)
High-affinity branched-chain amino acid transport ATP-binding protein Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX29_BLASD
Uncharacterized protein {ECO:0000313|EMBL:KJY41684.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-444.;"
braG2; High-affinity branched-chain amino acid transport ATP-binding protein
PLM3_127_b2_sep16_scaffold_25_76
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(85557..86297)
DNA (741bp) protein (247aa)
hypothetical protein Tax=Nocardiopsis chromatogenes RepID=UPI0003812BBA
GntR family transcriptional regulator
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:ACZ86938.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_127_b2_sep16_scaffold_25_77
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

86499..87461
DNA (963bp) protein (321aa)
IolC protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VZU5_9ACTO
IolC protein
IolC protein {ECO:0000313|EMBL:AGZ42409.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_127_b2_sep16_scaffold_25_78
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

87451..88341
DNA (891bp) protein (297aa)
Uncharacterized protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W338_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ42410.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_127_b2_sep16_scaffold_25_79
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

88338..89267
DNA (930bp) protein (310aa)
hypothetical protein Tax=Nocardiopsis potens RepID=UPI0003497842
5-deoxyglucuronate isomerase {ECO:0000313|EMBL:KEI43586.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
putative myo-inositol catabolism protein IolB
PLM3_127_b2_sep16_scaffold_25_80
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

89264..91135
DNA (1872bp) protein (624aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MIH1_9ACTO
thiamine pyrophosphate protein domain-containing protein
Thiamine pyrophosphate protein central region {ECO:0000313|EMBL:ADB75377.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM3_127_b2_sep16_scaffold_25_81
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

91162..92655
DNA (1494bp) protein (498aa)
methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035D5E7E
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KDN22509.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
PLM3_127_b2_sep16_scaffold_25_82
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

92773..93774
DNA (1002bp) protein (334aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2N2D3_9ACTO
sugar ABC transporter substrate-binding protein
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ADI10139.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
PLM3_127_b2_sep16_scaffold_25_83
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

93818..94864
DNA (1047bp) protein (349aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2P9B2_9ACTO
Putative Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EPH42630.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
ribose ABC transporter permease
PLM3_127_b2_sep16_scaffold_25_84
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

94861..95724
DNA (864bp) protein (288aa)
hypothetical protein Tax=Pseudoclavibacter faecalis RepID=UPI000367432F
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:EYT54614.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
ABC transporter-like protein
PLM3_127_b2_sep16_scaffold_25_85
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

95797..96660
DNA (864bp) protein (288aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00035E482D
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ABK53582.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_127_b2_sep16_scaffold_25_86
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

96727..97659
DNA (933bp) protein (311aa)
myo-inosose-2 dehydratase (EC:4.2.1.44)
Myo-inosose-2 dehydratase {ECO:0000313|EMBL:ADD40370.1}; EC=4.2.1.44 {ECO:0000313|EMBL:ADD40370.1};; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
Myo-inosose-2 dehydratase Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q6X1_STANL
PLM3_127_b2_sep16_scaffold_25_87
Paenibacillus sp. Aloe-11, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

97693..98700
DNA (1008bp) protein (336aa)
Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01671}; EC=1.1.1.18 {ECO:0000256|HAMAP-Rule:MF_01671};; EC=1.1.1.369 {ECO:0000256|HAMAP-Rule:MF_01671};; Myo-inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01671}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. Aloe-11.;"
iolG; myo-inositol 2-dehydrogenase (EC:1.1.1.18)
Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase Tax=Paenibacillus sp. Aloe-11 RepID=H6CKD6_9BACL
PLM3_127_b2_sep16_scaffold_25_88
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(98781..99245)
DNA (465bp) protein (155aa)
Uncharacterized protein Tax=Pseudomonas alcaligenes OT 69 RepID=U3HHP7_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:CCH78965.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
PLM3_127_b2_sep16_scaffold_25_89
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(100050..100778)
DNA (729bp) protein (243aa)
ABC transporter related protein Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BCR7_MEISD
peptide ABC transporter ATP-binding protein
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJF63422.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
PLM3_127_b2_sep16_scaffold_25_90
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(100795..101343)
DNA (549bp) protein (183aa)
Extracellular solute-binding protein family 3 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BCR5_MEISD
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADH64648.1}; Flags: Precursor;; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
family 3 extracellular solute-binding protein
Displaying items 61-90 of 111 in total

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