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PLM3_127_b2_sep16_scaffold_105

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_105_1
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

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2..97
DNA (96bp) protein (32aa)
Glr4335 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NDA1_GLOVI
transposase
Glr4335 protein {ECO:0000313|EMBL:BAC92276.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
PLM3_127_b2_sep16_scaffold_105_2
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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168..956
DNA (789bp) protein (263aa)
S-adenosylmethionine (SAM)-dependent methyltransferase Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JMI0_STREN
S-adenosylmethionine (SAM)-dependent methyltransferase
S-adenosylmethionine (SAM)-dependent methyltransferase {ECO:0000313|EMBL:AEW99339.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
PLM3_127_b2_sep16_scaffold_105_3
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1317..1694
DNA (378bp) protein (126aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QCR8_CATAD
anti-sigma regulatory factor, serine/threonine protein kinase
Putative anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:ACU76531.1}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM3_127_b2_sep16_scaffold_105_4
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1691..2581
DNA (891bp) protein (297aa)
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily Tax=Frankia sp. (strain EuI1c) RepID=E3IV06_FRASU
sigma-B/F/G subfamily RNA polymerase sigma-28 factor
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily {ECO:0000313|EMBL:ADP78886.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_127_b2_sep16_scaffold_105_5
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2584..3546
DNA (963bp) protein (321aa)
hypothetical protein Tax=Actinomadura flavalba RepID=UPI000367741C
diacylglycerol kinase catalytic subunit
Diacylglycerol kinase catalytic region {ECO:0000313|EMBL:ACY99226.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_127_b2_sep16_scaffold_105_6
Mycobacterium marinum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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3708..5075
DNA (1368bp) protein (456aa)
Site-specific integrase Tax=Mycobacterium marinum (strain ATCC BAA-535 / M) RepID=B2HN81_MYCMM
site-specific integrase
Site-specific integrase {ECO:0000313|EMBL:ACC40579.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium marinum (strain ATCC BAA-535 / M).;"
PLM3_127_b2_sep16_scaffold_105_7
unknown

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comp(5403..5744)
DNA (342bp) protein (114aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_105_8
unknown

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comp(6190..6315)
DNA (126bp) protein (42aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_105_9
unknown

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6588..7022
DNA (435bp) protein (145aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_105_10
unknown

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comp(7450..7674)
DNA (225bp) protein (75aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_105_11
unknown

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comp(7671..7883)
DNA (213bp) protein (71aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_105_12
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8188..8391
DNA (204bp) protein (68aa)
hypothetical protein Tax=Microbacterium barkeri RepID=UPI0002F66595
Uncharacterized protein {ECO:0000313|EMBL:ERG63792.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_105_13
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8492..9334)
DNA (843bp) protein (281aa)
Glycerophosphoryl diester phosphodiesterase Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JEM0_ANAD2
glycerophosphoryl diester phosphodiesterase
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ACL64346.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258).;"
PLM3_127_b2_sep16_scaffold_105_14
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9974..10228
DNA (255bp) protein (85aa)
Transcriptional regulator WhiB Tax=Frankia RepID=I9KNA4_9ACTO
WhiB family cell cycle control transcriptional regulator
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM3_127_b2_sep16_scaffold_105_15
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

10386..11030
DNA (645bp) protein (215aa)
Response regulator receiver protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AZC4_STRRD
response regulator receiver protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_105_16
unknown

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11070..11699
DNA (630bp) protein (210aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_105_17
Xylanimonas cellulosilytica, Xylanimonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(11895..12113)
DNA (219bp) protein (73aa)
DNA binding domain protein, excisionase family Tax=Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) RepID=D1BZW0_XYLCX
excisionase family DNA binding domain-containing protein
DNA binding domain protein, excisionase family {ECO:0000313|EMBL:ACZ32088.1}; species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Xylanimonas.;" source="Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990; / XIL07).;"
PLM3_127_b2_sep16_scaffold_105_18
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12383..13330)
DNA (948bp) protein (316aa)
NAD-dependent epimerase/dehydratase Tax=Frankia sp. (strain EAN1pec) RepID=A8L2M6_FRASN
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABW10419.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_127_b2_sep16_scaffold_105_19
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13375..14025)
DNA (651bp) protein (217aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 1,141,733.;"
Signal peptidase I Tax=Enterococcus faecium RepID=C2HDY7_ENTFC
signal peptidase
PLM3_127_b2_sep16_scaffold_105_20
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14148..14555
DNA (408bp) protein (136aa)
superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase {ECO:0000313|EMBL:ABK52339.1}; EC=1.15.1.1 {ECO:0000313|EMBL:ABK52339.1};; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
Superoxide dismutase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LSC9_ACIC1
PLM3_127_b2_sep16_scaffold_105_21
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(14664..14858)
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:KJF17965.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
PLM3_127_b2_sep16_scaffold_105_22
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15002..15274)
DNA (273bp) protein (91aa)
Putative sigma factor Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RJ90_BLASD
putative sigma factor
Putative sigma factor {ECO:0000313|EMBL:CCG04835.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM3_127_b2_sep16_scaffold_105_23
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15256..15930)
DNA (675bp) protein (225aa)
RNA polymerase sigma factor Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CRS6_PSEUX
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_127_b2_sep16_scaffold_105_24
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(16228..17904)
DNA (1677bp) protein (559aa)
Oxidoreductase molybdopterin binding Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TGP0_9CHLR
oxidoreductase molybdopterin binding protein
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM3_127_b2_sep16_scaffold_105_25
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18025..18324)
DNA (300bp) protein (100aa)
Transglycosylase-associated protein Tax=Caenispirillum salinarum AK4 RepID=K9GZS1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJS34876.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
transglycosylase
PLM3_127_b2_sep16_scaffold_105_26
unknown

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comp(18438..18740)
DNA (303bp) protein (101aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_105_27

Not on your lists

comp(18831..20129)
DNA (1299bp) protein (433aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036CB975
Marine sediment metagenome DNA, contig: S01H1_L08301 {ECO:0000313|EMBL:GAF90028.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_105_28
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20316..21893)
DNA (1578bp) protein (526aa)
Uncharacterized protein Tax=Aeromicrobium marinum DSM 15272 RepID=E2S8X2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFQ84627.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
WD40 domain-containing protein
PLM3_127_b2_sep16_scaffold_105_29
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22327..23331)
DNA (1005bp) protein (335aa)
fbp; fructose 1,6-bisphosphatase class II (EC:3.1.3.11)
Fructose-1,6-bisphosphatase Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XEL8_MICPN
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
PLM3_127_b2_sep16_scaffold_105_30
unknown

Not on your lists

23433..23579
DNA (147bp) protein (49aa)

This feature has no annotations

Displaying items 1-30 of 94 in total

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