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PLM3_127_b2_sep16_scaffold_271

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_271_1
Streptomyces sp. PRh5, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(369..1715)
DNA (1347bp) protein (449aa)
Response regulator receiver protein Tax=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) RepID=B8HJF5_ARTCA
Uncharacterized protein {ECO:0000313|EMBL:EXU69632.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PRh5.;"
response regulator receiver protein
PLM3_127_b2_sep16_scaffold_271_2
Streptomyces sp. PRh5, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1684..3000)
DNA (1317bp) protein (439aa)
Uncharacterized protein Tax=Microbacterium laevaniformans OR221 RepID=H8E9L1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXU69484.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PRh5.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_271_trna_4
unknown

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comp(3317..3387)
DNA (71bp)
transferRNA Arg
PLM3_127_b2_sep16_scaffold_271_3
unknown

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comp(3605..4006)
DNA (402bp) protein (134aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_271_4
unknown

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comp(4212..4622)
DNA (411bp) protein (137aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_271_5
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4925..6397
DNA (1473bp) protein (491aa)
hypothetical protein Tax=Nocardia sp. BMG111209 RepID=UPI0003824029
Sodium:proton exchanger {ECO:0000313|EMBL:KHL04189.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
sodium/hydrogen exchanger
PLM3_127_b2_sep16_scaffold_271_6
Mycobacterium liflandii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6684..8030)
DNA (1347bp) protein (449aa)
Putative membrane protein Tax=Mycobacterium liflandii (strain 128FXT) RepID=L7V7R2_MYCL1
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGC63866.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium liflandii (strain 128FXT).;"
PLM3_127_b2_sep16_scaffold_271_7
unknown

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8623..8784
DNA (162bp) protein (54aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_271_8
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9109..9675
DNA (567bp) protein (189aa)
hypothetical protein Tax=Xanthomonas sp. SHU199 RepID=UPI0003676E0F
Uncharacterized protein {ECO:0000313|EMBL:EKU26784.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_271_9
unknown

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9675..10010
DNA (336bp) protein (112aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_271_10

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10046..10801
DNA (756bp) protein (252aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTM3_SIDLE
Marine sediment metagenome DNA, contig: S03H2_S02098 {ECO:0000313|EMBL:GAH57600.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_271_11
Knoellia flava, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(10830..11585)
DNA (756bp) protein (252aa)
Uncharacterized protein Tax=Gordonia soli NBRC 108243 RepID=M0QQK6_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KGN33444.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia flava TL1.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_271_trna_3
unknown

Not on your lists

comp(11888..11960)
DNA (73bp)
transferRNA Ala
PLM3_127_b2_sep16_scaffold_271_12
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(12037..12210)
DNA (174bp) protein (58aa)
hypothetical protein Tax=Actinomadura flavalba RepID=UPI0003690841
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ91977.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_127_b2_sep16_scaffold_271_13
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

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comp(12383..12664)
DNA (282bp) protein (94aa)
hypothetical protein Tax=Actinopolyspora halophila RepID=UPI000378B801
iojap family protein
Tax=RBG_13_Actinobacteria_55_18_curated
PLM3_127_b2_sep16_scaffold_271_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(12985..13722)
DNA (738bp) protein (246aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase Tax=Streptomyces RepID=D6A3P2_9ACTO
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_271_15
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13991..15250
DNA (1260bp) protein (420aa)
ABC transporter ATP-binding protein Tax=Actinomadura flavalba RepID=UPI000381A3BF
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETK32515.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
sugar ABC transporter ATP-binding protein
PLM3_127_b2_sep16_scaffold_271_16
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15292..16143
DNA (852bp) protein (284aa)
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CEH1_DESTA
Uncharacterized protein {ECO:0000313|EMBL:KEO85140.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase
PLM3_127_b2_sep16_scaffold_271_17
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16160..17500)
DNA (1341bp) protein (447aa)
GTPase CgtA, partial Tax=Saccharomonospora halophila RepID=UPI00036A539B
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454, ECO:0000256|SAAS:SAAS00043060}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_271_18
Mycobacterium gastri, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(17648..17917)
DNA (270bp) protein (90aa)
50S ribosomal protein L27 Tax=Mycobacterium tuberculosis complex RepID=RL27_MYCBO
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium gastri 'Wayne'.;"
putative 50S RIBOSOMAL protein L27 RPMA
PLM3_127_b2_sep16_scaffold_271_19
Propionibacterium acidifaciens, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(17919..18284)
DNA (366bp) protein (122aa)
50S ribosomal protein L21 Tax=Propionibacterium acidifaciens F0233 RepID=U2S7A6_9ACTO
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidifaciens F0233.;"
rplU; 50S ribosomal protein L21
PLM3_127_b2_sep16_scaffold_271_20
Streptomyces coelicolor, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18496..21405)
DNA (2910bp) protein (970aa)
hypothetical protein Tax=Streptomyces sp. LaPpAH-108 RepID=UPI0003727CBD
SCC88.10c; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAB75380.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group.;" source="Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145).;"
PLM3_127_b2_sep16_scaffold_271_21
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21864..23051)
DNA (1188bp) protein (396aa)
Rod shape-determining protein RodA Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAV9_THECD
rod shape-determining protein RodA
Rod shape-determining protein RodA {ECO:0000313|EMBL:ACY97119.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_127_b2_sep16_scaffold_271_22
BJP_IG2158_Actinobacteria_57_21, Bacteria

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comp(23059..25023)
DNA (1965bp) protein (655aa)
Penicillin-binding protein 2 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAV8_THECD
penicillin-binding protein 2
Tax=BJP_IG2158_Actinobacteria_57_21
PLM3_127_b2_sep16_scaffold_271_23
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(25034..25534)
DNA (501bp) protein (167aa)
rod shape-determining protein MreD Tax=Streptomyces sp. CNT302 RepID=UPI00037DB44D
rod shape-determining protein MreD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_271_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(25539..26381)
DNA (843bp) protein (281aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI0003687ADB
rod shape-determining protein MreC
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_271_25
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26461..27612)
DNA (1152bp) protein (384aa)
Cell shape determining protein, MreB/Mrl family Tax=Frankia sp. CN3 RepID=G6HL04_9ACTO
MreB/Mrl family cell shape determining protein
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:ADP80007.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_127_b2_sep16_scaffold_271_26
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27718..28134)
DNA (417bp) protein (139aa)
nucleoside-diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
Nucleoside diphosphate kinase Tax=Frankia sp. (strain EuI1c) RepID=E3ITV9_FRASU
PLM3_127_b2_sep16_scaffold_271_27
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28262..29557)
DNA (1296bp) protein (432aa)
FolC bifunctional protein Tax=Frankia sp. (strain EAN1pec) RepID=A8L1W9_FRASN
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
FolC bifunctional protein {ECO:0000313|EMBL:ABW14629.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_127_b2_sep16_scaffold_271_28
Desulfarculus baarsii, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(29582..32320)
DNA (2739bp) protein (913aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 /; 2st14).;"
Valine--tRNA ligase Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QLA1_DESB2
Displaying items 1-30 of 50 in total

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