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PLM3_127_b2_sep16_scaffold_487

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_487_1
Amycolicicoccus subflavus, Amycolicicoccus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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1..138
DNA (138bp) protein (46aa)
Elongation factor Tu Tax=Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) RepID=F6EHW1_AMYSD
elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Amycolicicoccus.;" source="Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1).;"
PLM3_127_b2_sep16_scaffold_487_2
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

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267..431
DNA (165bp) protein (55aa)
50S ribosomal protein L33 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q2I7_CATAD
rpmG; 50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM3_127_b2_sep16_scaffold_487_3
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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590..1036
DNA (447bp) protein (149aa)
UPF0336 protein SACE_6876 Tax=Saccharopolyspora erythraea RepID=Y6876_SACEN
UPF0336 protein IN07_05750 {ECO:0000256|HAMAP-Rule:MF_00799}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_487_4
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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1033..1446
DNA (414bp) protein (138aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI000372DBDE
Dehydratase {ECO:0000313|EMBL:KGH47620.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
MaoC domain-containing protein dehydratase
PLM3_127_b2_sep16_scaffold_487_5
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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1449..2381
DNA (933bp) protein (311aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIB0_THET1
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3_127_b2_sep16_scaffold_487_6
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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2441..3037
DNA (597bp) protein (199aa)
Uncharacterized protein Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z2T0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM65234.1}; species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
RNA polymerase ECF-type sigma factor
PLM3_127_b2_sep16_scaffold_487_7
unknown

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3034..3453
DNA (420bp) protein (140aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_487_trna_1
unknown

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3444..3523
DNA (80bp)
transferRNA Trp
PLM3_127_b2_sep16_scaffold_487_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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3595..3927
DNA (333bp) protein (111aa)
hypothetical protein Tax=Actinopolyspora halophila RepID=UPI00037D4759
preprotein translocase subunit SecE
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_487_9
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

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3965..4531
DNA (567bp) protein (189aa)
Transcription termination/antitermination protein NusG Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z0F0_9ACTN
transcription antitermination protein nusG
Tax=RBG_13_Actinobacteria_55_18_curated
PLM3_127_b2_sep16_scaffold_487_10
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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4575..5018
DNA (444bp) protein (148aa)
50S ribosomal protein L11 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PAQ6_9ACTO
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
50S ribosomal protein L11
PLM3_127_b2_sep16_scaffold_487_11
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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5189..5908
DNA (720bp) protein (240aa)
50S ribosomal protein L1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SHB9_GEOOG
50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM3_127_b2_sep16_scaffold_487_12
unknown

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5923..6792
DNA (870bp) protein (290aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_487_13
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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7069..7701
DNA (633bp) protein (211aa)
50S ribosomal protein L10 Tax=Frankia sp. BMG5.12 RepID=UPI000367E66D
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM3_127_b2_sep16_scaffold_487_14
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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7716..8111
DNA (396bp) protein (132aa)
50S ribosomal protein L7/L12 Tax=Frankia RepID=RL7_FRAAA
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
PLM3_127_b2_sep16_scaffold_487_15
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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8430..11882
DNA (3453bp) protein (1151aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
DNA-directed RNA polymerase subunit beta Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AW84_FRADG
DNA-directed RNA polymerase subunit beta
PLM3_127_b2_sep16_scaffold_487_16
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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11884..15891
DNA (4008bp) protein (1336aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' Tax=Sporichthya polymorpha RepID=UPI000360837F
PLM3_127_b2_sep16_scaffold_487_17
Arthrobacter gangotriensis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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16009..16731
DNA (723bp) protein (241aa)
GntR family transcriptional regulator Tax=Arthrobacter gangotriensis Lz1y RepID=M7MM37_9MICC
GntR family transcriptional regulator {ECO:0000313|EMBL:EMQ97387.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter gangotriensis Lz1y.;"
GntR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_487_18
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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16728..17489
DNA (762bp) protein (254aa)
hypothetical protein Tax=Frankia sp. Iso899 RepID=UPI0003B4A237
Uncharacterized protein {ECO:0000313|EMBL:AKB36720.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae C2J.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_487_19
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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17555..17833
DNA (279bp) protein (93aa)
phosphotransferase Tax=Amycolatopsis RepID=UPI0002627E93
ptsH; phosphotransferase system, phosphocarrier protein HPr
Phosphotransferase system, phosphocarrier protein HPr {ECO:0000313|EMBL:AIJ24953.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM3_127_b2_sep16_scaffold_487_20
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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17946..18500
DNA (555bp) protein (185aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=Paenibacillus sp. HW567 RepID=UPI0003644590
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_487_21
CSP1_5_NC10, NC10, Bacteria

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18497..19669
DNA (1173bp) protein (391aa)
NAD-dependent epimerase/dehydratase bin=bin3_NC10 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
NAD-dependent epimerase/dehydratase
Tax=CSP1_5_NC10
PLM3_127_b2_sep16_scaffold_487_22
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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19666..21375
DNA (1710bp) protein (570aa)
FAD dependent oxidoreductase Tax=Roseiflexus sp. (strain RS-1) RepID=A5UYF7_ROSS1
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABQ91660.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM3_127_b2_sep16_scaffold_487_23
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21375..22625
DNA (1251bp) protein (417aa)
anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC:1.1.5.3)
Glycerol-3-phosphate dehydrogenase, anaerobic, B subunit {ECO:0000313|EMBL:ACL23023.1}; EC=1.1.5.3 {ECO:0000313|EMBL:ACL23023.1};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
Glycerol-3-phosphate dehydrogenase, anaerobic, B subunit Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8GC49_CHLAD
PLM3_127_b2_sep16_scaffold_487_24
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

22664..23887
DNA (1224bp) protein (408aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5UYF9_ROSS1
glpC; sn-glycerol-3-phosphate dehydrogenase subunit C
4Fe-4S ferredoxin, iron-sulfur binding domain protein {ECO:0000313|EMBL:ABQ91662.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM3_127_b2_sep16_scaffold_487_25
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(23903..25552)
DNA (1650bp) protein (550aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI00036E8B10
Uncharacterized protein {ECO:0000313|EMBL:ETK37122.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
pdc; pyruvate dehydrogenase (cytochrome)
PLM3_127_b2_sep16_scaffold_487_26

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25679..25939
DNA (261bp) protein (87aa)
Putative Ribbon-helix-helix protein, copG family protein Tax=uncultured marine microorganism HF4000_APKG5H11 RepID=B3T8I8_9ZZZZ
Marine sediment metagenome DNA, contig: S12H4_C03017 {ECO:0000313|EMBL:GAI62417.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_127_b2_sep16_scaffold_487_27

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25936..26247
DNA (312bp) protein (104aa)
PemK-like protein; K07171 mRNA interferase [EC:3.1.-.-] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=bin7_NC10_sister organism_group=NC10
Marine sediment metagenome DNA, contig: S12H4_S11400 {ECO:0000313|EMBL:GAJ12435.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
MazF family transcriptional regulator
PLM3_127_b2_sep16_scaffold_487_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(26269..26916)
DNA (648bp) protein (216aa)
Dihydroxyacetone kinase, L subunit Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPQ6_PSEUX
dihydroxyacetone kinase subunit DhaL
Dihydroxyacetone kinase, L subunit {ECO:0000313|EMBL:AEA25173.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_127_b2_sep16_scaffold_487_29
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

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comp(26963..28477)
DNA (1515bp) protein (505aa)
glycerol kinase (EC:2.7.1.30) bin=bin9_gal15 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=bin9_gal15 organism_group=GAL15
glycerol kinase (EC:2.7.1.30)
Tax=CG_Dehalo_02
Displaying items 1-30 of 35 in total

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