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PLM3_127_b2_sep16_scaffold_600

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_600_1
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

3..353
DNA (351bp) protein (117aa)
Single-stranded DNA-binding protein Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M1H0_ACIFD
single-strand binding protein
Tax=RBG_16_Actinobacteria_68_21_curated
PLM3_127_b2_sep16_scaffold_600_2
unknown

Not on your lists

432..590
DNA (159bp) protein (53aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_600_3
unknown

Not on your lists

727..918
DNA (192bp) protein (64aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_600_4
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1010..1786
DNA (777bp) protein (259aa)
Uncharacterized protein Tax=Frankia sp. EUN1f RepID=D3CWZ4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFC84747.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_600_5
unknown

Not on your lists

1779..2180
DNA (402bp) protein (134aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_600_6
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3319..5109)
DNA (1791bp) protein (597aa)
Putative restriction-modification system methyltransferase Tax=Streptomyces scabies (strain 87.22) RepID=C9Z8L3_STRSW
restriction-modification system methyltransferase
Putative restriction-modification system methyltransferase {ECO:0000313|EMBL:CBG70041.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabies (strain 87.22) (Streptomyces scabiei).;"
PLM3_127_b2_sep16_scaffold_600_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5808..8687)
DNA (2880bp) protein (960aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XX50_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP37079.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM3_127_b2_sep16_scaffold_600_8
Streptomyces glaucescens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9034..10485)
DNA (1452bp) protein (484aa)
Serine/threonine protein kinase Tax=Rhodospirillum photometricum DSM 122 RepID=H6SP83_RHOPH
parallel beta-helix repeat-containing protein
Parallel beta-helix repeat-containing protein {ECO:0000313|EMBL:AIR99220.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces glaucescens.;"
PLM3_127_b2_sep16_scaffold_600_9
unknown

Not on your lists

10631..10786
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_600_10
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10789..11244
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=Frankia sp. CN3 RepID=G6HJ72_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KJR11075.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_600_11
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(11744..12382)
DNA (639bp) protein (213aa)
Putative uncharacterized protein Tax=Oscillatoria RepID=D8G5H6_9CYAN
Putative uncharacterized protein {ECO:0000313|EMBL:CBN57866.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
PLM3_127_b2_sep16_scaffold_600_12
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12640..13134)
DNA (495bp) protein (165aa)
TIGR00725 family protein Tax=Frankia sp. QA3 RepID=I9A0Z4_9ACTO
TIGR00725 family protein {ECO:0000313|EMBL:EIV93016.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_600_13
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13157..15502)
DNA (2346bp) protein (782aa)
Putative DEAD/DEAH box helicase Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VPD9_9ACTO
putative DEAD/DEAH box helicase
Putative DEAD/DEAH box helicase {ECO:0000313|EMBL:AGZ38664.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM3_127_b2_sep16_scaffold_600_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(15679..16602)
DNA (924bp) protein (308aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI00036E60A2
cell envelope-related function transcriptional attenuator common domain
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_600_15
unknown

Not on your lists

comp(16599..17048)
DNA (450bp) protein (150aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_600_16
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17522..17866
DNA (345bp) protein (115aa)
Anti-sigma factor antagonist Tax=Frankia sp. CN3 RepID=G6HJ69_9ACTO
anti-sigma-factor antagonist
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_127_b2_sep16_scaffold_600_17
Streptomyces olindensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17875..18321
DNA (447bp) protein (149aa)
anti-sigma regulatory factor Tax=Streptomyces chartreusis RepID=UPI000262FD08
Anti-sigma regulatory factor {ECO:0000313|EMBL:KDN77824.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces olindensis.;"
anti-sigma regulatory factor
PLM3_127_b2_sep16_scaffold_600_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

18602..20947
DNA (2346bp) protein (782aa)
V-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
potassium transporter Tax=Nocardiopsis chromatogenes RepID=UPI0003788D74
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_127_b2_sep16_scaffold_600_19
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

21264..23504
DNA (2241bp) protein (747aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
DNA topoisomerase 1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NJW2_ROSCS
PLM3_127_b2_sep16_scaffold_600_20
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23519..24187
DNA (669bp) protein (223aa)
thymidylate kinase (EC:2.7.4.9)
dTMP kinase {ECO:0000256|SAAS:SAAS00031932}; EC=2.7.4.9 {ECO:0000256|SAAS:SAAS00031932};; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
Thymidylate kinase Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7PWW5_CATAD
PLM3_127_b2_sep16_scaffold_600_21
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24171..25334
DNA (1164bp) protein (388aa)
DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:ACZ00071.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ACZ00071.1};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
hypothetical protein Tax=Longispora albida RepID=UPI00036B8B89
PLM3_127_b2_sep16_scaffold_600_22
unknown

Not on your lists

25616..25852
DNA (237bp) protein (79aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_600_23
Desulfotomaculum hydrothermale, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26259..26504)
DNA (246bp) protein (82aa)
Negative regulator of genetic competence ClpC/MecB Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8DY84_9FIRM
Negative regulator of genetic competence ClpC/MecB {ECO:0000313|EMBL:CCO07762.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum hydrothermale Lam5 = DSM 18033.;"
Clp amino terminal domain-containing protein
PLM3_127_b2_sep16_scaffold_600_24
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27038..27613
DNA (576bp) protein (192aa)
Uncharacterized protein Tax=Streptomyces ipomoeae 91-03 RepID=L1KJ46_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KIZ16058.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_600_trna_1
unknown

Not on your lists

28055..28136
DNA (82bp)
transferRNA Thr
PLM3_127_b2_sep16_scaffold_600_25
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28214..29389
DNA (1176bp) protein (392aa)
hypothetical protein Tax=Salinispora tropica RepID=UPI0003629A26
Micromonospora carbonacea strain JXNU-1 contig2, whole genome shotgun sequence {ECO:0000313|EMBL:KIR63361.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
GntR family transcriptional regulator
PLM3_127_b2_sep16_scaffold_600_26
Streptomyces sp. FR1, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29607..30077
DNA (471bp) protein (157aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000381F847
Histidine triad (HIT) protein {ECO:0000313|EMBL:AHE39062.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. FR1.;"
Histidine triad (HIT) protein
PLM3_127_b2_sep16_scaffold_600_27
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30302..31108
DNA (807bp) protein (269aa)
Transcriptional regulator, GntR family Tax=Frankia sp. (strain EuI1c) RepID=E3IX27_FRASU
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADP83799.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_127_b2_sep16_scaffold_600_28
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31174..31428
DNA (255bp) protein (85aa)
DNA binding domain protein, excisionase family Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXH2_PSEUX
Excisionase {ECO:0000313|EMBL:KJK49532.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
excisionase
PLM3_127_b2_sep16_scaffold_600_29
unknown

Not on your lists

31425..31799
DNA (375bp) protein (125aa)

This feature has no annotations

Displaying items 1-30 of 35 in total

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