ggKbase home page

PLM3_127_b2_sep16_scaffold_1223

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_1223_1
unknown

Not on your lists

comp(3..260)
DNA (258bp) protein (86aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_1223_2
unknown

Not on your lists

comp(257..577)
DNA (321bp) protein (107aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00036566D2
PLM3_127_b2_sep16_scaffold_1223_trna_2
unknown

Not on your lists

comp(721..793)
DNA (73bp)
transferRNA Phe
PLM3_127_b2_sep16_scaffold_1223_3
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1075..2730)
DNA (1656bp) protein (552aa)
60 kDa chaperonin Tax=Nitrosospira sp. APG3 RepID=M5DWF4_9PROT
groEL; chaperonin GroEL
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM3_127_b2_sep16_scaffold_1223_4
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2763..3059)
DNA (297bp) protein (99aa)
10 kDa chaperonin Tax=Thauera sp. 63 RepID=N6Y222_9RHOO
groES; chaperonin GroES
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_1223_5
CG_Epsilon_01, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

3487..4137
DNA (651bp) protein (217aa)
Tax=CG_Epsilon_01
PLM3_127_b2_sep16_scaffold_1223_6
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4190..5668)
DNA (1479bp) protein (493aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_1223_7
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5691..6581)
DNA (891bp) protein (297aa)
Putative 4-hydroxybenzoate polyprenyl transferase Tax=uncultured prokaryote AT3 RepID=D3W8G2_9ZZZZ
ubiA; 4-hydroxybenzoate polyprenyl transferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_1223_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6603..8639)
DNA (2037bp) protein (679aa)
ATP-dependent DNA helicase RecG Tax=Sulfuricella denitrificans skB26 RepID=S6AEW0_9PROT
recG; ATP-dependent DNA helicase RecG
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_1223_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8644..9024)
DNA (381bp) protein (127aa)
Conserved hypothetical endoribonuclease L-PSP Tax=Azoarcus sp. (strain BH72) RepID=A1K2N8_AZOSB
endoribonuclease L-PSP
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3_127_b2_sep16_scaffold_1223_10
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9099..9452
DNA (354bp) protein (118aa)
TPR repeat protein Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RJA3_ACCPU
TPR repeat-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_1223_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9449..11413
DNA (1965bp) protein (655aa)
amino acid transporter Tax=Herbaspirillum sp. JC206 RepID=UPI0003749F5B
amino acid permease family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_127_b2_sep16_scaffold_1223_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11445..15008)
DNA (3564bp) protein (1188aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6N3_NITMU
response regulator receiver/GGDEF/PAS/PAC domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_127_b2_sep16_scaffold_1223_13
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(15156..15545)
DNA (390bp) protein (130aa)
Response regulator receiver protein bin=GWC2_Methylomirabilis_70_16 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator receiver domain-containing protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3_127_b2_sep16_scaffold_1223_14
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15683..16336)
DNA (654bp) protein (218aa)
Two component transcriptional regulator, LuxR family Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ0_9BACT
two component LuxR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM3_127_b2_sep16_scaffold_1223_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16333..17424)
DNA (1092bp) protein (364aa)
response regulator receiver sensor signal transduction histidine kinase (EC:2.7.13.3)
Response regulator receiver sensor signal transduction histidine kinase Tax=Pedosphaera parvula Ellin514 RepID=B9XGC5_9BACT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3_127_b2_sep16_scaffold_1223_trna_1
unknown

Not on your lists

comp(17524..17596)
DNA (73bp)
transferRNA Ala
PLM3_127_b2_sep16_scaffold_1223_16
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17743..17943)
DNA (201bp) protein (67aa)
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_127_b2_sep16_scaffold_1223_17
RLO_Pseudomonas_59_9, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18055..18291)
DNA (237bp) protein (79aa)
Tax=RifCSPlowO2_12_Pseudomonas_59_9_curated
PLM3_127_b2_sep16_scaffold_1223_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18526..19266)
DNA (741bp) protein (247aa)
Sua5/YciO/YrdC/YwlC family protein Tax=Acidithiobacillus RepID=B5ERT3_ACIF5
Sua5/YciO/YrdC/YwlC family protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
Displaying 20 items

View Taxonomy